AmiGO Manual: Term Enrichment: Difference between revisions
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Non-database filters (e.g. species, evidence code) are not used in the calculation. | Non-database filters (e.g. species, evidence code) are not used in the calculation. | ||
The input for the terms must be in the form: GO:xxxxxxx, where x is an integer 0-9, with whitespace between the ids. | |||
The input for the gene products may be either gene product symbols and/or ids separated by whitespace, or a file in the [http://www.geneontology.org/GO.format.annotation.shtml Gene Association File] format. | |||
[[Category:AmiGO]] | [[Category:AmiGO]] | ||
[[Category:AmiGO_Manual]] | [[Category:AmiGO_Manual]] | ||
Revision as of 14:07, 18 September 2008
The Term Enrichment tool finds significant shared GO Terms or parents of those GO terms, used to describe the genes in the query/input set to help discover what those genes may have in common. The Term Enrichment tool makes use of the GO-TermFinder perl module written by Gavin Sherlock and Shuai Weng at Stanford University.
Non-database filters (e.g. species, evidence code) are not used in the calculation.
The input for the terms must be in the form: GO:xxxxxxx, where x is an integer 0-9, with whitespace between the ids.
The input for the gene products may be either gene product symbols and/or ids separated by whitespace, or a file in the Gene Association File format.