AmiGO Manual: Term Enrichment: Difference between revisions

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The input for the gene products may be either gene product symbols and/or ids separated by whitespace, or a file in the [http://www.geneontology.org/GO.format.annotation.shtml Gene Association File] format.
The input for the gene products may be either gene product symbols and/or ids separated by whitespace, or a file in the [http://www.geneontology.org/GO.format.annotation.shtml Gene Association File] format.
=Gene Product List=


=Background Set=
=Background Set=

Revision as of 17:47, 9 March 2009

The Term Enrichment tool finds significant shared GO Terms or parents of those GO terms, used to describe the genes in the query/input set to help discover what those genes may have in common. The Term Enrichment tool makes use of the GO-TermFinder perl module written by Gavin Sherlock and Shuai Weng at Stanford University.

Non-database filters (e.g. species, evidence code) are not used in the calculation.

The input for the terms must be in the form: GO:xxxxxxx, where x is an integer 0-9, with whitespace between the ids.

The input for the gene products may be either gene product symbols and/or ids separated by whitespace, or a file in the Gene Association File format.

Gene Product List

Background Set

Thresholds

Advanced Options

Result Types

Results Formats