AmiGO Manual: Term Enrichment

From GO Wiki
Revision as of 17:47, 9 March 2009 by Sjcarbon (talk | contribs)
Jump to navigation Jump to search

The Term Enrichment tool finds significant shared GO Terms or parents of those GO terms, used to describe the genes in the query/input set to help discover what those genes may have in common. The Term Enrichment tool makes use of the GO-TermFinder perl module written by Gavin Sherlock and Shuai Weng at Stanford University.

Non-database filters (e.g. species, evidence code) are not used in the calculation.

The input for the terms must be in the form: GO:xxxxxxx, where x is an integer 0-9, with whitespace between the ids.

The input for the gene products may be either gene product symbols and/or ids separated by whitespace, or a file in the Gene Association File format.

Gene Product List

Background Set

Thresholds

Advanced Options

Result Types

Results Formats