AmiGO Manual: Visualize: Difference between revisions
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=Overview= | =Overview= | ||
This page is a light wrapper around a RESTful graphing component. The | This page is a light wrapper around a RESTful graphing component. The default input is a list of GO IDs (e.g. GO:0002244) separated by whitespace. | ||
In all cases, the output is the minimal GO graph containing the inputted GO terms and their closure to the root(s). | |||
== | |||
=Advanced Format= | =Advanced Format= | ||
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* Titles, if supplied, must be unique | * Titles, if supplied, must be unique | ||
* There are bugs in GraphViz--if you get too fancy, strange things might start happening. | * There are bugs in GraphViz--if you get too fancy, strange things might start happening. | ||
* The SVG+XML output is not supported by Microsoft web browsers. | |||
[[Category:AmiGO_Manual]] | [[Category:AmiGO_Manual]] | ||
[[Category:AmiGO]] | [[Category:AmiGO]] | ||
Revision as of 16:59, 11 December 2009
Overview
This page is a light wrapper around a RESTful graphing component. The default input is a list of GO IDs (e.g. GO:0002244) separated by whitespace.
In all cases, the output is the minimal GO graph containing the inputted GO terms and their closure to the root(s).
==
Advanced Format
Is actually a simple JSON description of nodes in the graph. For example:
{"GO:0002244":{"title": "foo",
"body": "bar",
"fill": "#ccccff",
"font": "#0000ff",
"border":"red"},
"GO:0005575":{"title":"alone",
"body":""},
"GO:0033060":{}}
Would resolve to: TODO
Caveats
- Titles, if supplied, must be unique
- There are bugs in GraphViz--if you get too fancy, strange things might start happening.
- The SVG+XML output is not supported by Microsoft web browsers.