AmiGO Manual: Visualize

Overview

This page is a light wrapper around a RESTful graphing component. The main (simple) input here is a list of GO IDs (e.g. GO:0002244) separated by whitespace.

Advanced Format

Is actually a simple JSON description of nodes in the graph. For example:

{"GO:0002244":{"title": "foo",
               "body":  "bar",
               "fill":  "#ccccff",
               "font":  "#0000ff",
               "border":"red"},
"GO:0005575":{"title":"alone",
              "body":""},
"GO:0033060":{}}

Would resolve to: TODO

Caveats

• Titles, if supplied, must be unique
• There are bugs in GraphViz--if you get too fancy, strange things might start happening.