Difference between revisions of "AmiGO Release schedule"

From GO Wiki
Jump to navigation Jump to search
Line 10: Line 10:


=== November 2006 ===
=== November 2006 ===
*IEAs
*Displaying IEAs will be explored. Interface will be modified to handle IEAs.
*Download button (if this can't be done now)
*We will not have a new window open when you click on a term. This will take care of not having the search box/link back to home on every term page.
 
*We would like a summary table of counts- IEAs and non-IEAs per species on the term details page so that users get an idea and they can click on what they want. This way -we don't retrieve all the annotations for display and slow the server down.
*Download option will be implemented.
*We should write a specs document on what we want the Download button to do before it can be implemented.
 
*GOst batch query-
Shu has offered to take a look at the GMOD Blast interface.
We decided to have a 100 sequence cut-off.
On the results page, we will provide an option to view one sequence at a time or an option to download.
 
 
Offering more parameters for BLAST queries will be explored for future.
 
NOTE about IEAs-
The database that includes IEAs (called GO FULL) is currently only updated once a month. It currently takes 7-8 days to create the GO FULL database so at best AmiGO could only be updated every 1.5 weeks.  It is now updated every 2 or 3 days.  So with the current database loading software displaying IEAs would mean updating AmiGO much less often.
 
This is suboptimal. But currently AmiGO cannot handle IEAs in a meaningful way. Should this be handled in two steps?
1) phase1-Prepare the interface, make changes to the application to deal with IEAs
2) phase2-Consider options to load the database more often.


=== Unknown ===
=== Unknown ===

Revision as of 23:40, 8 July 2006

Documentation of past and future AmiGO releases.

Upcoming releases

August 2006

  • Reset button to reset filters. This should go on all pages.
  • Save filter settings (cookies)
  • Annotation counts (several users have pointed this out). Can we get rid of counts if we can't provide the accurate #?
  • Display assigned_by information (column #15 from the gene association file)

November 2006

  • Displaying IEAs will be explored. Interface will be modified to handle IEAs.
  • We will not have a new window open when you click on a term. This will take care of not having the search box/link back to home on every term page.
  • We would like a summary table of counts- IEAs and non-IEAs per species on the term details page so that users get an idea and they can click on what they want. This way -we don't retrieve all the annotations for display and slow the server down.
  • Download option will be implemented.
  • We should write a specs document on what we want the Download button to do before it can be implemented.
  • GOst batch query-

Shu has offered to take a look at the GMOD Blast interface. We decided to have a 100 sequence cut-off. On the results page, we will provide an option to view one sequence at a time or an option to download.


Offering more parameters for BLAST queries will be explored for future.

NOTE about IEAs- The database that includes IEAs (called GO FULL) is currently only updated once a month. It currently takes 7-8 days to create the GO FULL database so at best AmiGO could only be updated every 1.5 weeks. It is now updated every 2 or 3 days. So with the current database loading software displaying IEAs would mean updating AmiGO much less often.

This is suboptimal. But currently AmiGO cannot handle IEAs in a meaningful way. Should this be handled in two steps? 1) phase1-Prepare the interface, make changes to the application to deal with IEAs 2) phase2-Consider options to load the database more often.

Unknown

  • Interface makeover
  • web-based map2slim

Past releases

March 2006

  • a list
  • of the new features added
  • would be here