Annotation: Difference between revisions
No edit summary |
|||
Line 39: | Line 39: | ||
*[[Common Annotation Framework Specification]] | *[[Common Annotation Framework Specification]] | ||
*[[gp2protein file]] | |||
==How To?== | ==How To?== |
Revision as of 02:58, 23 February 2012
Purpose
Group Leaders
Emily Dimmer (GOA@UniProt) and Rama Balakrishnan (SGD) with help from Pascale (dictyBase/Ref.genome project).
GO Annotation Meetings
2010 GO Annotation Camp in Geneva, Switzerland, June 16-18 2010
Guidelines from Annotation Camp
Annotation Meeting Stanford, CA, Feb 2012
Activities
- Roadmap 2010
- Roadmap 2011
- RoadMap (PDF file - provides project goals with time line)
- Educate GOC curators about best annotation practice;
- Enforce annotation rules/policies within GOC
- Maintain the annotation/evidence code documentation
- Train/assist new groups with annotations: see How_External_Communities_can_contribute_annotations_to_the_GO_Consortium
- Educate and keep all the annotating groups up-to-date with changes in GAF format
- Keep all curators up-to-date with ontology development and how it affects annotations
- Chain of Evidence- Proposal to represent chain/summation of evidence in an annotation.
- Evidence Code Ontology (ECO) - Proposal to represent evidence in an ontology
- Proposal for cron tabs - Proposal for setting up cron tabs for generating PAINT and MF-BP inferences
- Examples for phylogeny based evidence codes
- Ideas for GOC community curation tool
- Protein Complex ids as GO annotation objects
- LEGO-style annotation ideas
- Proposed Developments to the GAF annotation format
- InterPro2GO Session October 4th 2011
- MF-BP inferences
- Protein Binding clean up
- Annotation Guidance Pages
- Evidence Code proposals
How To?
How to load the ontology file into Obo-Edit tool directly from the web without downloading the file from cvs etc?
OBO-Edit can load files from the disk OR from a URL.
Choose the "File -> Load..." menu option
Choose the OBO File Adapter
Type http://www.geneontology.org/ontology/gene_ontology.obo into the filename box
(From:http://www.geneontology.org/newsletter/archive/200705.shtml#tip)
To see the has_part relationships, use this URL for the extended GO version:
http://www.geneontology.org/ontology/obo_format_1_2/gene_ontology_ext.obo
Annotation Conference calls
- Calls are held on the 2nd and 4th Tuesday of each month. At 4pm GMT, 8am PDT. Please add items you would like discussed into the agenda for the next call, or contact Emily or Rama.
- 2010
- Annotation Jamboree, Nov 8, 2010
- Annotation Conf. Call, Dec 13, 2010
- 2011
- Annotation Conf. Call, Jan 10, 2011
- Annotation Conf. Call, Feb 22, 2011
- Annotation Conf. Call, Mar 22, 2011
- Annotation Conf. Call, June 28, 2011
- Annotation Conf. Call, July 12, 2011
- Annotation Conf. Call, July 26, 2011 Transcription jamboree
- Annotation Conf. Call, August 9, 2011
- Annotation Conf. Call, August 23, 2011
- Annotation Conf. Call, September 13, 2011
- Annotation Conf. Call, September 27, 2011
- Annotation Conf. Call, October 11, 2011
- Annotation Conf. Call, October 25, 2011
- Annotation Conf. Call, November 22, 2011
- Annotation Conf. Call, December 13, 2011
- 2012
- Annotation Conf. Call, January 10, 2012
- Annotation Conf. Call, January 24, 2012
- Annotation Conf. Call, February 14, 2012
- Annotation Conf. Call, February 28, 2012- CANCELED
Monthly Reports
- September 2011
- August 2011
- July 2011
- June 2011
- May 2011
- April 2011
- March 2011
- February 2011
- January 2011
- December 2010
- November 2010
- October 2010
- September 2010
- August 2010
- July 2010
- June 2010
Meeting calendar
Annotation_topics for next meeting
Metrics of success
Process
Issues for the Annotation Group
- Division of annotation and GO content development effort and feedback between participating databases (UniProtKB and MODs)
Annotations to Catalytic activity with IPI