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= History =
= History =
== [[Archived Pages]] ==
== [[Archived Pages]] ==
=== GO Annotation Meetings ===
[http://gocwiki.geneontology.org/index.php/2010_GO_camp_Meeting_Logistics 2010 GO Annotation Camp in Geneva, Switzerland, June 16-18 2010 ]
[[Guidelines from Annotation Camp]]
[http://wiki.geneontology.org/index.php/2012_Annotation_Meeting_Stanford Annotation Meeting Stanford, CA, Feb 2012]
=== Migration of annotating groups to Protein2GO ===
[[Procedure for migration of protein annotations to Protein2GO]]
[[Extension of Protein2GO to non-UniProtKB Identifiers]]
=== Activities ===
*[http://wiki.geneontology.org/index.php/Annotation_Advocacy_Roadmap_2010 Roadmap 2010]
*[http://wiki.geneontology.org/index.php/Annotation_Advocacy_Roadmap_2011 Roadmap 2011]
*[[Media:AnnotationRoadMap.pdf | RoadMap]] (PDF file - provides project goals with time line)
*Educate GOC curators about best annotation practice;
*Enforce annotation rules/policies within GOC
*Maintain the annotation/evidence code documentation
**[[Mock-ups of new GOC Annotation pages]]
*Train/assist new groups with annotations: see [[How_External_Communities_can_contribute_annotations_to_the_GO_Consortium]]
*Educate and keep all the annotating groups up-to-date with changes in GAF format
*Keep all curators up-to-date with ontology development and how it affects annotations
*[[Chain of Evidence]]- Proposal to represent chain/summation of evidence in an annotation.
*[[Evidence Code Ontology (ECO)]] - Proposal to represent evidence in an ontology
*[[Proposal for cron tabs]] - Proposal for setting up cron tabs for generating PAINT and MF-BP inferences
*[[Examples for phylogeny based evidence codes]]
*[[Ideas for GOC community curation tool]]
*[[Protein Complex ids as GO annotation objects]]
** [[Annotation guidelines for annotating complexes as annotation objects]]
** [[Protein Complex Conference Call June19, 2015]]
** [[Protein Complex Conference Call July15, 2015]]
*[[LEGO-style annotation ideas]]
* [[Proposed Developments to the GAF annotation format]]
*[[InterPro2GO Session October 4th 2011]]
*[[MF-BP inferences]]
*[[Protein Binding clean up]]
*[[Annotation Guidance Pages]]
*[[Evidence Code proposals]]
*[[With/From field restrictions for evidence codes]]
*[[Core Consortium annotation activities]]
*[[:Category:GPAD|GPAD]]
*[[Common Annotation Framework Specification]]
*[[gp2protein file]]
*[[gp2rna file]]
*[[gp_unlocalized file]]
*[[mechanisms for reducing annotation redundancy]]
*[[Annotations to Cell Fraction-type terms]]
*[[TermEnrichment: Gold Standard Data Sets]]
*[["Response to" terms]]
*[[GAF 2.1 specs]]
=== Monthly Reports ===
*[[September2011_Annotation_Advocacy_Report|September 2011]]
*[[August2011_Annotation_Advocacy_Report|August 2011]]
*[[July2011_Annotation_Advocacy_Report|July 2011]]
*[[June2011_Annotation_Advocacy_Report|June 2011]]
*[[May2011_Annotation_Advocacy_Report|May 2011]]
*[[April2011_Annotation_Advocacy_Report|April 2011]]
*[[March2011_Annotation_Advocacy_Report|March 2011]]
*[[February2011_Annotation_Advocacy_Report|February 2011]]
*[[January2011_Annotation_Advocacy_Report|January 2011]]
*[[December2010_Annotation_Advocacy_Report|December 2010]]
*[[November2010_Annotation_Advocacy_Report|November 2010]]
*[[October2010_Annotation_Advocacy_Report|October 2010]]
*[[September2010_Annotation_Advocacy_Report|September 2010]]
*[[August2010_Annotation_Advocacy_Report|August 2010]]
*[[July2010_Annotation_Advocacy_Report|July 2010]]
*[[Jun2010_Annotation_Advocacy_Report|June 2010]]
=== Meeting calendar ===
[[Annotation_topics for next meeting]]
[[Annotation_31Jan10]]
[[Annotation_21Dec10]]
[[Annotation_19Oct10]]
[[Annotation_21Sept10]]
[[Annotation_17Aug10]]
[[Annotation_04Aug10]]
[[Annotation_19July10]]
[[Annotation_22June10]]
[[Annotation_08June10]]
[[Annotation_01June10]]
[[Annotation_17May10]]
[[Annotation_29Apr10]]
[[Annotation_15Apr10]]
[[Annotation_08Apr10]]
[[Annotation_22Mar10]]
[[Annotation_15Mar10]]
[[Annotation_10Apr10]]
=== Process ===
[http://gocwiki.geneontology.org/index.php/Annotation_Issues_and_Management Annotation Issues]
=== Issues for the Annotation Group ===
# Division of annotation and GO content development effort and feedback between participating databases (UniProtKB and MODs)
[[Annotations to Catalytic activity with IPI]]
[[Annotation Quality Control Checks]]
[[Action items from March 2010 GOC meeting]]
====How to load the ontology file into Obo-Edit tool directly from the web without downloading the file from cvs etc?====
OBO-Edit can load files from the disk OR from a URL.<br>
Choose the "File -> Load..." menu option<br>
Choose the OBO File Adapter<br>
Type http://www.geneontology.org/ontology/gene_ontology.obo into the filename box<br>
(From:http://www.geneontology.org/newsletter/archive/200705.shtml#tip)
To see the has_part relationships, use this URL for the extended GO version:<br>
http://www.geneontology.org/ontology/obo_format_1_2/gene_ontology_ext.obo


[[Category: Annotation]] [[Category:Working Groups]]
[[Category: Annotation]] [[Category:Working Groups]]

Revision as of 11:44, 16 January 2018

Group Leaders

David Hill (MGI) and Kimberly Van Auken (WB)

Annotation Documentation

Introduction to Annotation

Ontology-Specific Guidelines

Biological Process

  • Annotation Relations
  • Term-specific Guidelines

Molecular Function

  • Annotation Relations
  • Term-specific Guidelines

Cellular Component

  • Annotation Relations
  • Term-specific Guidelines

Guide to GO Evidence Codes

Noctua and GO-CAM Models

Annotation Extensions

Annotation Review Request

Annotation File Pipelines

Metrics of success (needs review)

Communication

Annotation Conference Calls

When

  • Calls are held on the 2nd and 4th Tuesday of each month at 4:00pm GMT, 11:00am EST, 8:00am PST
  • Calls are scheduled on the GO's Google calendar. Please request access to the calendar if you don't have it.

How to Join

  • to join via phone: enter Meeting ID 976175422 after dialing in
  • from US: +1 408 638 0968 (US Toll) or +1 646 558 8656 (US Toll)
  • from UK: +44 (0) 20 3695 0088 or +44 (0) 80 0031 5717
  • from Switzerland: +41 (0) 31 528 0988 or +41 800 002 622

Agenda and Minutes

  • Please contact David and Kimberly if there are items you would like to add to the agenda

GO-CAM and Noctua Calls

When

  • Calls are held on the 2nd and 4th Wednesday of each month at 4:00pm GMT, 11:00am EST, 8:00am PST
  • Calls are scheduled on the GO's Google calendar. Please request access to the calendar if you don't have it.

How to Join

  • to join via phone: enter Meeting ID 679970729 after dialing in
  • from US: +1 408 638 0968 (US Toll) or +1 646 558 8656 (US Toll)
  • from UK: +44 (0) 20 3695 0088 or +44 (0) 80 0031 5717
  • from Switzerland: +41 (0) 31 528 0988 or +41 800 002 622

Agenda and Minutes

  • Please contact David and Kimberly if there are items you would like to add to the agenda


GO Annotation on GitHub

GO Annotation on Google Drive

History

Archived Pages