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| = History = | | = History = |
| == [[Archived Pages]] == | | == [[Archived Pages]] == |
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| === GO Annotation Meetings ===
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| [http://gocwiki.geneontology.org/index.php/2010_GO_camp_Meeting_Logistics 2010 GO Annotation Camp in Geneva, Switzerland, June 16-18 2010 ]
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| [[Guidelines from Annotation Camp]]
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| [http://wiki.geneontology.org/index.php/2012_Annotation_Meeting_Stanford Annotation Meeting Stanford, CA, Feb 2012]
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| === Migration of annotating groups to Protein2GO ===
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| [[Procedure for migration of protein annotations to Protein2GO]]
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| [[Extension of Protein2GO to non-UniProtKB Identifiers]]
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| === Activities ===
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| *[http://wiki.geneontology.org/index.php/Annotation_Advocacy_Roadmap_2010 Roadmap 2010]
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| *[http://wiki.geneontology.org/index.php/Annotation_Advocacy_Roadmap_2011 Roadmap 2011]
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| *[[Media:AnnotationRoadMap.pdf | RoadMap]] (PDF file - provides project goals with time line)
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| *Educate GOC curators about best annotation practice;
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| *Enforce annotation rules/policies within GOC
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| *Maintain the annotation/evidence code documentation
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| **[[Mock-ups of new GOC Annotation pages]]
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| *Train/assist new groups with annotations: see [[How_External_Communities_can_contribute_annotations_to_the_GO_Consortium]]
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| *Educate and keep all the annotating groups up-to-date with changes in GAF format
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| *Keep all curators up-to-date with ontology development and how it affects annotations
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| *[[Chain of Evidence]]- Proposal to represent chain/summation of evidence in an annotation.
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| *[[Evidence Code Ontology (ECO)]] - Proposal to represent evidence in an ontology
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| *[[Proposal for cron tabs]] - Proposal for setting up cron tabs for generating PAINT and MF-BP inferences
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| *[[Examples for phylogeny based evidence codes]]
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| *[[Ideas for GOC community curation tool]]
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| *[[Protein Complex ids as GO annotation objects]]
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| ** [[Annotation guidelines for annotating complexes as annotation objects]]
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| ** [[Protein Complex Conference Call June19, 2015]]
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| ** [[Protein Complex Conference Call July15, 2015]]
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| *[[LEGO-style annotation ideas]]
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| * [[Proposed Developments to the GAF annotation format]]
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| *[[InterPro2GO Session October 4th 2011]]
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| *[[MF-BP inferences]]
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| *[[Protein Binding clean up]]
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| *[[Annotation Guidance Pages]]
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| *[[Evidence Code proposals]]
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| *[[With/From field restrictions for evidence codes]]
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| *[[Core Consortium annotation activities]]
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| *[[:Category:GPAD|GPAD]]
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| *[[Common Annotation Framework Specification]]
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| *[[gp2protein file]]
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| *[[gp2rna file]]
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| *[[gp_unlocalized file]]
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| *[[mechanisms for reducing annotation redundancy]]
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| *[[Annotations to Cell Fraction-type terms]]
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| *[[TermEnrichment: Gold Standard Data Sets]]
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| *[["Response to" terms]]
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| *[[GAF 2.1 specs]]
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| === Monthly Reports ===
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| *[[September2011_Annotation_Advocacy_Report|September 2011]]
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| *[[August2011_Annotation_Advocacy_Report|August 2011]]
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| *[[July2011_Annotation_Advocacy_Report|July 2011]]
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| *[[June2011_Annotation_Advocacy_Report|June 2011]]
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| *[[May2011_Annotation_Advocacy_Report|May 2011]]
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| *[[April2011_Annotation_Advocacy_Report|April 2011]]
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| *[[March2011_Annotation_Advocacy_Report|March 2011]]
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| *[[February2011_Annotation_Advocacy_Report|February 2011]]
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| *[[January2011_Annotation_Advocacy_Report|January 2011]]
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| *[[December2010_Annotation_Advocacy_Report|December 2010]]
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| *[[November2010_Annotation_Advocacy_Report|November 2010]]
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| *[[October2010_Annotation_Advocacy_Report|October 2010]]
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| *[[September2010_Annotation_Advocacy_Report|September 2010]]
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| *[[August2010_Annotation_Advocacy_Report|August 2010]]
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| *[[July2010_Annotation_Advocacy_Report|July 2010]]
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| *[[Jun2010_Annotation_Advocacy_Report|June 2010]]
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| === Meeting calendar ===
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| [[Annotation_topics for next meeting]]
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| [[Annotation_31Jan10]]
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| [[Annotation_21Dec10]]
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| [[Annotation_19Oct10]]
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| [[Annotation_21Sept10]]
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| [[Annotation_17Aug10]]
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| [[Annotation_04Aug10]]
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| [[Annotation_19July10]]
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| [[Annotation_22June10]]
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| [[Annotation_08June10]]
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| [[Annotation_01June10]]
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| [[Annotation_17May10]]
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| [[Annotation_29Apr10]]
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| [[Annotation_15Apr10]]
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| [[Annotation_08Apr10]]
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| [[Annotation_22Mar10]]
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| [[Annotation_15Mar10]]
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| [[Annotation_10Apr10]]
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|
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| === Process ===
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| [http://gocwiki.geneontology.org/index.php/Annotation_Issues_and_Management Annotation Issues]
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|
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| === Issues for the Annotation Group ===
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| # Division of annotation and GO content development effort and feedback between participating databases (UniProtKB and MODs)
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| [[Annotations to Catalytic activity with IPI]]
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| [[Annotation Quality Control Checks]]
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| [[Action items from March 2010 GOC meeting]]
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| ====How to load the ontology file into Obo-Edit tool directly from the web without downloading the file from cvs etc?====
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| OBO-Edit can load files from the disk OR from a URL.<br>
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| Choose the "File -> Load..." menu option<br>
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| Choose the OBO File Adapter<br>
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| Type http://www.geneontology.org/ontology/gene_ontology.obo into the filename box<br>
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| (From:http://www.geneontology.org/newsletter/archive/200705.shtml#tip)
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| To see the has_part relationships, use this URL for the extended GO version:<br>
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| http://www.geneontology.org/ontology/obo_format_1_2/gene_ontology_ext.obo
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| [[Category: Annotation]] [[Category:Working Groups]] | | [[Category: Annotation]] [[Category:Working Groups]] |