Difference between revisions of "Annotation"

From GO Wiki
Jump to navigation Jump to search
(Undo revision 37304 by Aiai00125 (talk))
Line 1: Line 1:
complexion or use darker foundation, like a implies of expressing their freedom. http://www.discounttiffanyselling.com/ They generally place on long, false nails with crystal software programs and large
==Purpose==
their obsession with accessories. http://www.moncleronlinejacket.com/ necklaces with heart, tiny bear and kitty snake or ice-cream pendants.  
==Group Leaders==
youthful girls don't want to place on large earrings which make http://www.acheterpandoras.com/ them lookup mature; they favor tiny article earrings instead. Punk youngsters adore piercings and tattoos.
Emily Dimmer (GOA@UniProt) and Rama Balakrishnan (SGD) with help from Pascale (dictyBase/Ref.genome project).
 
==GO Annotation Camp==
[http://gocwiki.geneontology.org/index.php/2010_GO_camp_Meeting_Logistics 2010 GO Annotation Camp in Geneva, Switzerland, June 16-18 2010 ]
 
[[Guidelines from Annotation Camp]]
 
==Activities==
 
*[http://wiki.geneontology.org/index.php/Annotation_Advocacy_Roadmap_2010 Roadmap 2010]
*[http://wiki.geneontology.org/index.php/Annotation_Advocacy_Roadmap_2011 Roadmap 2011]
*[[Media:AnnotationRoadMap.pdf | RoadMap]] (PDF file - provides project goals with time line)
*Educate GOC curators about best annotation practice;
*Enforce annotation rules/policies within GOC
*Maintain the annotation/evidence code documentation
**[[Mock-ups of new GOC Annotation pages]]
*Train/assist new groups with annotations: see [[How_External_Communities_can_contribute_annotations_to_the_GO_Consortium]]
*Educate and keep all the annotating groups up-to-date with changes in GAF format
**[[Column 16: Cell Type]]
*Keep all curators up-to-date with ontology development and how it affects annotations
 
*[[Chain of Evidence]]- Proposal to represent chain/summation of evidence in an annotation.
*[[Evidence Code Ontology (ECO)]] - Proposal to represent evidence in an ontology
*[[Proposal for cron tabs]] - Proposal for setting up cron tabs for generating PAINT and MF-BP inferences
*[[Examples for phylogeny based evidence codes]]
*[[Ideas for GOC community curation tool]]
*[[Protein Complex ids as GO annotation objects]]
*[[LEGO-style annotation ideas]]
* [[Proposed Developments to the GAF annotation format]]
*[[InterPro2GO Session October 4th 2011]]
 
==How To?==
How to load the ontology file into Obo-Edit tool directly from the web without downloading the file from cvs etc?<br>
OBO-Edit can load files from the disk OR from a URL.<br>
Choose the "File -> Load..." menu option<br>
Choose the OBO File Adapter<br>
Type http://www.geneontology.org/ontology/gene_ontology.obo into the filename box<br>
(From:http://www.geneontology.org/newsletter/archive/200705.shtml#tip)
 
To see the has_part relationships, use this URL for the extended GO version:<br>
 
http://www.geneontology.org/ontology/obo_format_1_2/gene_ontology_ext.obo
 
==Annotation Conference calls==
 
*[[Topics for annotation call | Add your topics/issues]]
 
*[[Agenda for November 8th |Annotation Jamboree, Nov 8, 2010]]
*[[Agenda for Dec 13th | Annotation Conf. Call, Dec 13, 2010]]
*[[Annotation Conf. Call, Jan 10, 2011]]
*[[Annotation Conf. Call, Feb 22, 2011]]
*[[Annotation Conf. Call, Mar 22, 2011]]
*[[Annotation Conf. Call, June 28, 2011]]
*[[Annotation Conf. Call, July 12, 2011]]
* Annotation Conf. Call, July 26, 2011 [[Transcription jamboree]]
*[[Annotation Conf. Call, August 9, 2011]]
*[[Annotation Conf. Call, August 23, 2011]]
*[[Annotation Conf. Call, September 13, 2011]]
*[[Annotation Conf. Call, September 27, 2011]]
*[[Annotation Conf. Call, October 4, 2011]]
*[[Annotation Conf. Call, October 18, 2011]]
*[[Annotation Conf. Call, November 2, 2011]]
*[[Annotation Conf. Call, November 16, 2011]]
*[[Annotation Conf. Call, November 30, 2011]]
*[[Annotation Conf. Call, December 14, 2011]]
 
==Monthly Reports==
*[[September2011_Annotation_Advocacy_Report|September 2011]]
*[[August2011_Annotation_Advocacy_Report|August 2011]]
*[[July2011_Annotation_Advocacy_Report|July 2011]]
*[[June2011_Annotation_Advocacy_Report|June 2011]]
*[[May2011_Annotation_Advocacy_Report|May 2011]]
*[[April2011_Annotation_Advocacy_Report|April 2011]]
*[[March2011_Annotation_Advocacy_Report|March 2011]]
*[[February2011_Annotation_Advocacy_Report|February 2011]]
*[[January2011_Annotation_Advocacy_Report|January 2011]]
*[[December2010_Annotation_Advocacy_Report|December 2010]]
*[[November2010_Annotation_Advocacy_Report|November 2010]]
*[[October2010_Annotation_Advocacy_Report|October 2010]]
*[[September2010_Annotation_Advocacy_Report|September 2010]]
*[[August2010_Annotation_Advocacy_Report|August 2010]]
*[[July2010_Annotation_Advocacy_Report|July 2010]]
*[[Jun2010_Annotation_Advocacy_Report|June 2010]]
 
==Meeting calendar==
[[Annotation_topics for next meeting]]
 
[[Annotation_31Jan10]]
 
[[Annotation_21Dec10]]
 
[[Annotation_19Oct10]]
 
[[Annotation_21Sept10]]
 
[[Annotation_17Aug10]]
 
[[Annotation_04Aug10]]
 
[[Annotation_19July10]]
 
[[Annotation_22June10]]
 
[[Annotation_08June10]]
 
[[Annotation_01June10]]
 
[[Annotation_17May10]]
 
[[Annotation_29Apr10]]
 
[[Annotation_15Apr10]]
 
[[Annotation_08Apr10]]
 
[[Annotation_22Mar10]]
 
[[Annotation_15Mar10]]
 
==Metrics of success==
 
 
* [[Annotations removed as a result of Annotation QCs]]
 
* [http://go.berkeleybop.org/news4go/node/80| Moved to GAF2.0 format on the 1st June 2010]
 
==Process==
 
[http://gocwiki.geneontology.org/index.php/Annotation_Issues_and_Management Annotation Issues]
 
==Issues for the Annotation Group==
# Division of annotation and GO content development effort and feedback between participating databases (UniProtKB and MODs)
 
[[Annotations to Catalytic activity with IPI]]
[[Annotation Quality Control Checks]]
 
[[Action items from March 2010 GOC meeting]]

Revision as of 04:28, 26 September 2011

Purpose

Group Leaders

Emily Dimmer (GOA@UniProt) and Rama Balakrishnan (SGD) with help from Pascale (dictyBase/Ref.genome project).

GO Annotation Camp

2010 GO Annotation Camp in Geneva, Switzerland, June 16-18 2010

Guidelines from Annotation Camp

Activities

How To?

How to load the ontology file into Obo-Edit tool directly from the web without downloading the file from cvs etc?
OBO-Edit can load files from the disk OR from a URL.
Choose the "File -> Load..." menu option
Choose the OBO File Adapter
Type http://www.geneontology.org/ontology/gene_ontology.obo into the filename box
(From:http://www.geneontology.org/newsletter/archive/200705.shtml#tip)

To see the has_part relationships, use this URL for the extended GO version:

http://www.geneontology.org/ontology/obo_format_1_2/gene_ontology_ext.obo

Annotation Conference calls

Monthly Reports

Meeting calendar

Annotation_topics for next meeting

Annotation_31Jan10

Annotation_21Dec10

Annotation_19Oct10

Annotation_21Sept10

Annotation_17Aug10

Annotation_04Aug10

Annotation_19July10

Annotation_22June10

Annotation_08June10

Annotation_01June10

Annotation_17May10

Annotation_29Apr10

Annotation_15Apr10

Annotation_08Apr10

Annotation_22Mar10

Annotation_15Mar10

Metrics of success

Process

Annotation Issues

Issues for the Annotation Group

  1. Division of annotation and GO content development effort and feedback between participating databases (UniProtKB and MODs)

Annotations to Catalytic activity with IPI

Annotation Quality Control Checks

Action items from March 2010 GOC meeting