Annotation: Difference between revisions
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*[[Annotation Conf. Call, September 13, 2011]] | *[[Annotation Conf. Call, September 13, 2011]] | ||
*[[Annotation Conf. Call, September 27, 2011]] | *[[Annotation Conf. Call, September 27, 2011]] | ||
*[[Annotation Conf. Call, October | *[[Annotation Conf. Call, October 11, 2011]] | ||
*[[Annotation Conf. Call, October | *[[Annotation Conf. Call, October 25, 2011]] | ||
*[[Annotation Conf. Call, November | *[[Annotation Conf. Call, November 15, 2011]] | ||
*[[Annotation Conf. Call, November | *[[Annotation Conf. Call, November 29, 2011]] | ||
*[[Annotation Conf. Call, December 13, 2011]] | |||
*[[Annotation Conf. Call, December | |||
==Monthly Reports== | ==Monthly Reports== | ||
Revision as of 12:44, 7 October 2011
Purpose
Group Leaders
Emily Dimmer (GOA@UniProt) and Rama Balakrishnan (SGD) with help from Pascale (dictyBase/Ref.genome project).
GO Annotation Camp
2010 GO Annotation Camp in Geneva, Switzerland, June 16-18 2010
Guidelines from Annotation Camp
Activities
- Roadmap 2010
- Roadmap 2011
- RoadMap (PDF file - provides project goals with time line)
- Educate GOC curators about best annotation practice;
- Enforce annotation rules/policies within GOC
- Maintain the annotation/evidence code documentation
- Train/assist new groups with annotations: see How_External_Communities_can_contribute_annotations_to_the_GO_Consortium
- Educate and keep all the annotating groups up-to-date with changes in GAF format
- Keep all curators up-to-date with ontology development and how it affects annotations
- Chain of Evidence- Proposal to represent chain/summation of evidence in an annotation.
- Evidence Code Ontology (ECO) - Proposal to represent evidence in an ontology
- Proposal for cron tabs - Proposal for setting up cron tabs for generating PAINT and MF-BP inferences
- Examples for phylogeny based evidence codes
- Ideas for GOC community curation tool
- Protein Complex ids as GO annotation objects
- LEGO-style annotation ideas
- Proposed Developments to the GAF annotation format
- InterPro2GO Session October 4th 2011
How To?
How to load the ontology file into Obo-Edit tool directly from the web without downloading the file from cvs etc?
OBO-Edit can load files from the disk OR from a URL.
Choose the "File -> Load..." menu option
Choose the OBO File Adapter
Type http://www.geneontology.org/ontology/gene_ontology.obo into the filename box
(From:http://www.geneontology.org/newsletter/archive/200705.shtml#tip)
To see the has_part relationships, use this URL for the extended GO version:
http://www.geneontology.org/ontology/obo_format_1_2/gene_ontology_ext.obo
Annotation Conference calls
- Annotation Jamboree, Nov 8, 2010
- Annotation Conf. Call, Dec 13, 2010
- Annotation Conf. Call, Jan 10, 2011
- Annotation Conf. Call, Feb 22, 2011
- Annotation Conf. Call, Mar 22, 2011
- Annotation Conf. Call, June 28, 2011
- Annotation Conf. Call, July 12, 2011
- Annotation Conf. Call, July 26, 2011 Transcription jamboree
- Annotation Conf. Call, August 9, 2011
- Annotation Conf. Call, August 23, 2011
- Annotation Conf. Call, September 13, 2011
- Annotation Conf. Call, September 27, 2011
- Annotation Conf. Call, October 11, 2011
- Annotation Conf. Call, October 25, 2011
- Annotation Conf. Call, November 15, 2011
- Annotation Conf. Call, November 29, 2011
- Annotation Conf. Call, December 13, 2011
Monthly Reports
- September 2011
- August 2011
- July 2011
- June 2011
- May 2011
- April 2011
- March 2011
- February 2011
- January 2011
- December 2010
- November 2010
- October 2010
- September 2010
- August 2010
- July 2010
- June 2010
Meeting calendar
Annotation_topics for next meeting
Metrics of success
Process
Issues for the Annotation Group
- Division of annotation and GO content development effort and feedback between participating databases (UniProtKB and MODs)
Annotations to Catalytic activity with IPI