Difference between revisions of "Annotation"

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*[[LEGO-style annotation ideas]]
*[[LEGO-style annotation ideas]]
* [[Proposed Developments to the GAF annotation format]]
* [[Proposed Developments to the GAF annotation format]]
*[[InterPro2GO Session October 4th 2011]]


==How To?==
==How To?==

Revision as of 08:01, 23 September 2011

Purpose

Group Leaders

Emily Dimmer (GOA@UniProt) and Rama Balakrishnan (SGD) with help from Pascale (dictyBase/Ref.genome project).

GO Annotation Camp

2010 GO Annotation Camp in Geneva, Switzerland, June 16-18 2010

Guidelines from Annotation Camp

Activities

How To?

How to load the ontology file into Obo-Edit tool directly from the web without downloading the file from cvs etc?
OBO-Edit can load files from the disk OR from a URL.
Choose the "File -> Load..." menu option
Choose the OBO File Adapter
Type http://www.geneontology.org/ontology/gene_ontology.obo into the filename box
(From:http://www.geneontology.org/newsletter/archive/200705.shtml#tip)

To see the has_part relationships, use this URL for the extended GO version:

http://www.geneontology.org/ontology/obo_format_1_2/gene_ontology_ext.obo

Annotation Conference calls

Monthly Reports

Meeting calendar

Annotation_topics for next meeting

Annotation_31Jan10

Annotation_21Dec10

Annotation_19Oct10

Annotation_21Sept10

Annotation_17Aug10

Annotation_04Aug10

Annotation_19July10

Annotation_22June10

Annotation_08June10

Annotation_01June10

Annotation_17May10

Annotation_29Apr10

Annotation_15Apr10

Annotation_08Apr10

Annotation_22Mar10

Annotation_15Mar10

Metrics of success

Process

Annotation Issues

Issues for the Annotation Group

  1. Division of annotation and GO content development effort and feedback between participating databases (UniProtKB and MODs)

Annotations to Catalytic activity with IPI

Annotation Quality Control Checks

Action items from March 2010 GOC meeting