Annotation Advocacy Roadmap: Difference between revisions
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[[Category:Advocacy_and_Outreach]] | |||
{|border="1" cell spacing="0" cellpadding="5" align="center" | {|border="1" cell spacing="0" cellpadding="5" align="center" | ||
!Project | !Project | ||
!March | !March 2010 | ||
!April | !April 2010 | ||
!May | !May 2010 | ||
!June | !June 2010 | ||
!July | !July 2010 | ||
!August | !August 2010 | ||
!September | !September 2010 | ||
!October | !October 2010 | ||
!November | !November 2010 | ||
!December | !December 2010 | ||
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!Educate GOC curators|Jamborees for Reference Genome | !Educate GOC curators|Jamborees for Reference Genome | ||
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| | |Annotation Jamboree on transcription <font color ="red">(DONE) | ||
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|phase 1 QC checks for protein binding annotations | |phase 1 QC checks for protein binding annotations | ||
|request for QC checks ( | |request for QC checks <font color ="red">(DONE) | ||
|formulate phase 2 QC checks, come up with pipeline (schedule for running these scripts etc.) | |formulate phase 2 QC checks, come up with pipeline (schedule for running these scripts etc.) | ||
|request for phase 2 QC checks | |request for phase 2 QC checks | ||
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!Soft QC checks (annotations that need to be reviewed but not removed) | |||
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|working groups formed <font color ="red">(DONE) | |working groups formed <font color ="red">(DONE) | ||
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|complete at GO Camp | |complete at GO Camp <font color ="red">(DONE) | ||
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|guidelines in production | |guidelines in production <font color ="red">(DONE) | ||
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|discussion at ISMB|work on details | |discussion at ISMB|work on details | ||
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|evidence code proposal presented to larger GOC <font color ="red">(DONE. Comments received for second draft of proposal) | |||
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|new ECO in production | |new ECO in production | ||
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|guidelines for GAF2.0 (column 16) | |guidelines for GAF2.0 (column 16) | ||
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|GAF2.0 in production on June 1st|continue discussion on col-16 content at GO camp | |GAF2.0 in production on June 1st|continue discussion on col-16 content at GO camp <font color ="red">(DONE) | ||
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|Guidelines for use of Cell Type in Col. 16 sent to GO list for comment | |||
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| | |QuickGO interface re-development made public | ||
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Latest revision as of 15:48, 9 April 2014
Project | March 2010 | April 2010 | May 2010 | June 2010 | July 2010 | August 2010 | September 2010 | October 2010 | November 2010 | December 2010 |
---|---|---|---|---|---|---|---|---|---|---|
Jamborees for Reference Genome | Ongoing | Annotation Jamboree on transcription (DONE) | ||||||||
Outreach to new groups | document policy/guidelines for new annotating groups/jamborees (start) | document policy/guidelines for new annotating groups/jamborees (finish) | ||||||||
Enforce annotation guidelines (absolute checks-annotations are wrong) | phase 1 QC checks for protein binding annotations | request for QC checks (DONE) | formulate phase 2 QC checks, come up with pipeline (schedule for running these scripts etc.) | request for phase 2 QC checks | phase 1 QC checks in production | phase 2 QC checks in production | ||||
Soft QC checks (annotations that need to be reviewed but not removed) | gather specs for taxon triggers, matrix checks, other checks from annotation WGs | formulate soft QC checks, come up with pipeline (schedule for running these scripts etc.) | soft QC checks in production | |||||||
Documentation of annotation guidelines | working groups formed (DONE) | complete at GO Camp (DONE) | guidelines in production (DONE) | |||||||
Documentation of evidence code guidelines | agreed to adopt a new evidence code system | initiate conversation with ECO group and ? | ratify IMP, RCA, IGI documentation | work on details | evidence code proposal presented to larger GOC (DONE. Comments received for second draft of proposal) | new ECO in production | ||||
GAF file format | guidelines for GAF2.0 (column 16) | continue discussion on col-16 content at GO camp (DONE) | Guidelines for use of Cell Type in Col. 16 sent to GO list for comment | |||||||
Loading PAINT GAF files | feedback | discussion at GO camp | incorporate PAINT inferences at MODs | |||||||
Loading other GAF files | initiate talk with Chris about inter-ontology inferences | send email out to MODs to review/give feedback | establish pipeline (resting place, updating schedule etc.) | incorporate inter-ontology inferences | ||||||
Educate curators on ontology development | ongoing | |||||||||
AmiGO/QuickGO displays | ongoing | QuickGO interface re-development made public |