Annotation Archived Pages

GO Annotation Meetings

2010 GO Annotation Camp in Geneva, Switzerland, June 16-18 2010

Guidelines from Annotation Camp

Annotation Meeting Stanford, CA, Feb 2012

Migration of annotating groups to Protein2GO

Procedure for migration of protein annotations to Protein2GO

Extension of Protein2GO to non-UniProtKB Identifiers

Annotation File Formats

• Moved to GAF2.0 format on the 1st June 2010

Activities

• Roadmap 2010
• Roadmap 2011
• RoadMap (PDF file - provides project goals with time line)
• Educate GOC curators about best annotation practice;
• Enforce annotation rules/policies within GOC
• Maintain the annotation/evidence code documentation
• Train/assist new groups with annotations: see [1]
• Educate and keep all the annotating groups up-to-date with changes in GAF format

• Keep all curators up-to-date with ontology development and how it affects annotations

• Chain of Evidence- Proposal to represent chain/summation of evidence in an annotation.
• Evidence Code Ontology (ECO) - Proposal to represent evidence in an ontology
• Proposal for cron tabs - Proposal for setting up cron tabs for generating PAINT and MF-BP inferences
• Examples for phylogeny based evidence codes
• Ideas for GOC community curation tool
• Protein Complex ids as GO annotation objects
  • Annotation guidelines for annotating complexes as annotation objects
  • Protein Complex Conference Call June19, 2015
  • Protein Complex Conference Call July15, 2015
• LEGO-style annotation ideas
• Proposed Developments to the GAF annotation format
• InterPro2GO Session October 4th 2011
• MF-BP inferences
• Protein Binding clean up
• Annotation Guidance Pages
• Evidence Code proposals
• With/From field restrictions for evidence codes
• Core Consortium annotation activities
• GPAD

• Common Annotation Framework Specification
• gp2protein file
• gp2rna file
• mechanisms for reducing annotation redundancy
• Annotations to Cell Fraction-type terms
• TermEnrichment: Gold Standard Data Sets
• "Response to" terms
• GAF 2.1 specs

Monthly Reports

• September 2011
• August 2011
• July 2011
• June 2011
• May 2011
• April 2011
• March 2011
• February 2011
• January 2011
• December 2010
• November 2010
• October 2010
• September 2010
• August 2010
• July 2010
• June 2010

Meeting calendar

Annotation_31Jan10

Annotation_21Dec10

Annotation_19Oct10

Annotation_21Sept10

Annotation_17Aug10

Annotation_04Aug10

Annotation_19July10

Annotation_22June10

Annotation_08June10

Annotation_01June10

Annotation_17May10

Annotation_29Apr10

Annotation_15Apr10

Annotation_08Apr10

Annotation_15Mar10

Process

Annotation_Issues_and_Management

Issues for the Annotation Group

Annotations to Catalytic activity with IPI

Action items from March 2010 GOC meeting