Annotation Conf. Call, February 10, 2015

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Agenda

Jenkins reports

RNA Central

Please send your RNA identifiers to RNA central (who, how coming!)

Demo of CalTech annotation tool

We will use CalTech's annotation tool for our curation consistency exercises. This tool allows us to highlight a sentence and enter specific GO terms/evidence etc. Kimberly will give a demo of how it works. If you want an account in this tool, please put your name down here on this wiki page so Kimberly can send one email to her programmer requesting for accounts.

  • Petra
  • Val
  • Bob
  • Aleks (EBI)
  • Penelope (EBI)
  • Dmitry (MGI)
  • David H (MGI)

Annotation Consistency Exercise - February 24, 2015

Here is a link to the paper that I've chosen for the first annotation consistency exercise/discussion:

http://www.ncbi.nlm.nih.gov/pubmed/25569233

It describes studies on C. elegans bcl-7 (http://www.wormbase.org/species/c_elegans/gene/WBGene00016192) and human BCL7B (http://www.uniprot.org/uniprot/Q9BQE9).

The main thing I'd like to focus on for the annotation exercise is what Biological Process annotations curators make, noting that, at the moment, one all-encompassing Biological Process term might not yet exist for what is described in the paper.

Some possibly helpful links on worm anatomy/biology:

--Kimberly