Annotation Conf. Call, January 24, 2012: Difference between revisions
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* infered from Ontology by Computer [[Evidence for Inferences based on Ontology links]] (Rama) | * infered from Ontology by Computer [[Evidence for Inferences based on Ontology links]] (Rama) | ||
* Update on [http://wiki.geneontology.org/index.php/Protein_Binding_clean_up protein binding obsoletions](Jane) | * <strike>Update on [http://wiki.geneontology.org/index.php/Protein_Binding_clean_up protein binding obsoletions](Jane) </strike> postphoned until next call | ||
* Update on communication mechanisms for changes to the GO taxon file. (Jane) | * <strike>Update on communication mechanisms for changes to the GO taxon file. (Jane)</strike> postphoned until next call | ||
Revision as of 09:41, 24 January 2012
Agenda
- Developing new documentation for IKR (Emily)
- Developing documentation to support a new evidence code for 'ISS from IC evidence' ; resulting from discussions at the last GO annotation call - Annotation_Conf._Call,_January_10,_2012 (Emily)
- infered from Ontology by Computer Evidence for Inferences based on Ontology links (Rama)
Update on protein binding obsoletions(Jane)postphoned until next call
Update on communication mechanisms for changes to the GO taxon file. (Jane)postphoned until next call
- FYI on QC checks. The following QC checks have been incorporated into Mike's filtering script and we are planning to move this to production by Feb 1st.
1) All IC annotations should include a GO id in column 8 (with/from)
2) All IDA annotations should NOT include any id in column 8 (with/from)
3) ND-evidenced Annotations to root nodes only http://geneontology.org/GO.annotation_qc.shtml#GO_AR:0000011
4) ND annotations should NOT have PMID in the reference column
5) References in the GAF -Column 6 should be of the format SGD_REF:S000047763|PMID:2676709. References like PMID:PMID:14561399', or PMID:unpublished or GOC:unpublished should be filtered out.
6) Annotations to GO:0005488, 'binding' should be made with IPI and the interacting partner should be in the 'with' column.
7) Annotations with IPI evidence code made after Jan 1, 2012 that don't have an ID in the 'with' column should be filtered out (grand father old annotations)