Annotation Conf. Call, June 23, 2015: Difference between revisions

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| potassium ion binding
| potassium ion binding
| GO:0030955  
| GO:0030955  
| 1/3
| IDA
|
|
|-
| ATP1A2
| contributes_to
| ATPase activity
| GO:0016887
| 1/3
| IDA
|
|
|-
| ATP1A2
| contributes_to
| ATPase activity
| GO:0016887
| 1/3
| IDA, IMP
|
| (in_presence_of CHEBI:29101 Sodium AND CHEBI:29103 Potassium AND UniProt: P05026 ATP1B1)
|-
| ATP1B1
| contributes_to
| ATPase activity
| GO:0016887
| 1/3
| 1/3
| IDA
| IDA

Revision as of 03:34, 23 June 2015


Agenda

Ability to add comments to an annotation

We want to be able to capture why a particular experiment/result was not captured as an annotation and make this comment visible to the public. This issue came up during the April curation consistency discussion (mouse paper). I made a github ticket. https://github.com/ebi-uniprot/Protein2GO/issues/1 How should we control this field so we don't write long sentences? Limit it to 140 characters? Other ideas?

obsolete relationships

There are some relationships that were obsoleted (mostly for use with col-16). Not sure how other groups are rehousing these annotations. Instead of a regular consistency exercise is it okay if we go through some of the papers and get your input on how to rehouse those col-16 data?

June Consistency paper

http://www.ncbi.nlm.nih.gov/pubmed/?term=23954377

Annotation Summary

Gene Qualifier Term ID # of Annotations Evidence Code Summary 'With' field Summary Extension Summary
Molecular Function Annotations
ATP1A2 contributes_to drug binding GO:0008144 1/3 IPI CHEBI:472805 - ouabain
ATP1B1 contributes_to drug binding GO:0008144 1/3 IPI CHEBI:472805 - ouabain
ATP1A2 contributes_to carbohydrate derivative binding GO:0097367 1/3 IPI CHEBI:472805 - ouabain
ATP1B1 contributes_to carbohydrate derivative binding GO:0097367 1/3 IPI CHEBI:472805 - ouabain
ATP1A2 contributes_to sodium ion binding GO:0097367 1/3 IDA
ATP1A2 contributes_to sodium ion binding GO:0097367 1/3 IDA, IMP (in_presence_of CHEBI:29103 Potassium AND P05026 ATP1B1)
ATP1B1 contributes_to sodium ion binding GO:0097367 1/3 IDA
ATP1A2 contributes_to potassium ion binding GO:0030955 1/3 IDA
ATP1A2 contributes_to potassium ion binding GO:0030955 1/3 IDA, IMP (in_presence_of CHEBI:29101 Sodium AND P05026 ATP1B1)
ATP1B1 contributes_to potassium ion binding GO:0030955 1/3 IDA
ATP1A2 contributes_to ATPase activity GO:0016887 1/3 IDA
ATP1A2 contributes_to ATPase activity GO:0016887 1/3 IDA, IMP (in_presence_of CHEBI:29101 Sodium AND CHEBI:29103 Potassium AND UniProt: P05026 ATP1B1)
ATP1B1 contributes_to ATPase activity GO:0016887 1/3 IDA
Biological Process Annotations
Cellular Component Annotations
membrane GO:0016020 3/3 IDA