Difference between revisions of "Annotation Conf. Call, June 28, 2011"

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Present: Emily, Paola, Jane, Yasmin, Becky, Julie, Ranjana, Petra, Chris, Jodie, Li, STan, Brenley.
Present: Emily, Paola, Jane, Yasmin, Becky, Julie, Ranjana, Petra, Chris, Jodie, Li, STan, Brenley, Lakshmi.


'''Ontology Development work'''
'''Ontology Development work'''

Revision as of 11:14, 28 June 2011

Present: Emily, Paola, Jane, Yasmin, Becky, Julie, Ranjana, Petra, Chris, Jodie, Li, STan, Brenley, Lakshmi.

Ontology Development work

Paola to present the work generated from the apoptosis content meeting, held on the 1st of June, in collaboration with Apo-Sys Consortium.

Annotation QCs

  • New annotation QC checks to be added into file check script:
    • requirement for IC-evidenced annotations to have non-null WITH
    • requirement for IPI-evidenced annotations to have non-null WITH

further details available here

  • The OBO file contains in the comment field: subsetdef: high_level_annotation_qc "High-level terms not to be used for direct annotation"

Note that this term is in the subset of terms that should not be used for direct gene product annotation. Annotations to this term will be removed during annotation QC.

GO:0007610 behavior GO:0051716 cellular response to stimulus GO:0048585 negative regulation of response to stimulus GO:0048584 positive regulation of response to stimulus GO:0048583 regulation of response to stimulus GO:0009628 response to abiotic stimulus GO:0009607 response to biotic stimulus GO:0042221 response to chemical stimulus GO:0009719 response to endogenous stimulus GO:0009605 response to external stimulus GO:0050896 response to stimulus GO:0006950 response to stress

    • interest from curation tools to include this suggestion? Other terms to add to this list? Include column 16 qualifier to the annotation advise?

Annotation Jamboree for Transcription

  • date to be decided for annotation discussion - 26th July?
  • Ideas for the proposed transcription jamboree, to be held during the annotation call on the 26th July? Examples of issues that could be raised here

GONUTs page also now available here: http://gowiki.tamu.edu/wiki/index.php/Category:RefGenome_Electronic_Jamboree_2011-07_Txn_Factors

Reminders of previous action items

  • Call for volunteers to adopt a GO annotation guidance page


Webex invite: https://geneontology.webex.com/geneontology/j.php?ED=144580232&UID=1082189137&PW=NMTk2MGVjZWRk&RT=MTgjMjE%3D