Annotation Conf. Call 2016-04-26: Difference between revisions
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(Created page with "=Conference call Format= Standard Bluejeans link from meting home page =Agenda= ==IDA or IEP for an isoform annotation== Recently Karen was annotating a paper where an isoform...") |
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==IDA or IEP for an isoform annotation== | ==IDA or IEP for an isoform annotation== | ||
Recently Karen was annotating a paper where an isoform-agnostic antibody was used to detect the presence of a protein in a cell. Subsequent experiments showed that an RNA coding for a specific isoform had the same localization, supporting that the protein isoform was localized to that component. The question came up as to whether we should use IDA or IEP for evidence to support this. Since the experiment did not address the protein isoform itself, is it an IDA? | Recently Karen was annotating a paper where an isoform-agnostic antibody was used to detect the presence of a protein in a cell. Subsequent experiments showed that an RNA coding for a specific isoform had the same localization, supporting that the protein isoform was localized to that component. The question came up as to whether we should use IDA or IEP for evidence to support this. Since the experiment did not address the protein isoform itself, is it an IDA? | ||
Also worth noting that if we decide that this is IEP, we will need to change the rules on the validation script that checks GAFs since IEP is currently only allowed for Process annotations. | |||
==Annotation Consistency Exercise== | ==Annotation Consistency Exercise== | ||
[[Category: Annotation Working Group]] | [[Category: Annotation Working Group]] | ||
Revision as of 10:35, 20 April 2016
Conference call Format
Standard Bluejeans link from meting home page
Agenda
IDA or IEP for an isoform annotation
Recently Karen was annotating a paper where an isoform-agnostic antibody was used to detect the presence of a protein in a cell. Subsequent experiments showed that an RNA coding for a specific isoform had the same localization, supporting that the protein isoform was localized to that component. The question came up as to whether we should use IDA or IEP for evidence to support this. Since the experiment did not address the protein isoform itself, is it an IDA?
Also worth noting that if we decide that this is IEP, we will need to change the rules on the validation script that checks GAFs since IEP is currently only allowed for Process annotations.