Annotation Conf. Call 2018-08-14: Difference between revisions
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*https://stanford.zoom.us/j/976175422 | *https://stanford.zoom.us/j/976175422 | ||
= Agenda = | |||
== Montreal Meeting, October Wednesday, 17th - Friday, 19th == | == Montreal Meeting, October Wednesday, 17th - Friday, 19th == | ||
*[http://wiki.geneontology.org/index.php/2018_Montreal_GOC_Meeting_Logistics Logistics] | *[http://wiki.geneontology.org/index.php/2018_Montreal_GOC_Meeting_Logistics Logistics] | ||
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*We can discuss questions on future calls, if needed | *We can discuss questions on future calls, if needed | ||
= Minutes = | |||
*David, Paul, Kimberly, Suzi L, Shur-Jen, Michele, Sabrina, Laurent-Philippe, Tanya, Liz, Tom, Seth, Karen, Edith, Pascale, George, Helen, Midori | |||
[[Category:Annotation Working Group]] | [[Category:Annotation Working Group]] |
Revision as of 11:05, 14 August 2018
Meeting URL
Agenda
Montreal Meeting, October Wednesday, 17th - Friday, 19th
GO Conference Calls
Tuesdays
- Still will be Tuesdays at 8am PDT
- Proposed meeting schedule:
- 1st Tuesday: Alliance Biological Function
- 2nd Tuesday: GO Consortium
- 3rd Tuesday: Alliance Biological Function/GO-CAM Working Group
- 4th Tuesday: GO-CAM Working Group
- 5th Tuesday: ad hoc, as needed
- One Zoom URL for all - https://stanford.zoom.us/j/976175422
Annotation Discussion
ND Annotations
- Automatic deletion of ND-evidenced annotations
- ND annotations to a root node term are intended to signify that the curator looked at all available evidence and the MF, BP, or CC of a gene/gene product is not known
- GOA proposed to remove ND annotations automatically from their curation database because this was not happening manually
- Note that curators can only update or remove annotations from their respective groups in Protein2GO
- Annotation from only a select set of evidence codes would result in automatic removal of ND annotations
ECO:0000269 (EXP) and its descendants
ECO:0006056 (HTP) and its descendants
ECO:0000250 (ISS) and its descendants
ECO:0000317 (IGC) and its descendants
- Generally agreed that when there is experimental or sequence-based evidence for a more granular annotation, the ND annotation should be removed
- However, 'protein binding' MF annotations are thought of differently by different groups and we need to reach a consensus about how these MF annotations should be considered wrt automatically removing existing MF ND annotations
- Proposal: as part of QC pipeline, alert groups to genes/gene products that have an ND annotation and also an annotation to a more granular term (any evidence code?)
PAINT Annotations
- Refresher on how PAINT annotations are created
- Doubled up IBA+EXP annotations (from Karen Christie)
- PAINT:circular transfer of annotations
Annotation Review
- 84 open annotation review tickets
- Reminder to check go-annotation tracker tickets where your group has been assigned and finish up where you can
- Questions? Please add questions/comments to the individual tickets
- We can discuss questions on future calls, if needed
Minutes
- David, Paul, Kimberly, Suzi L, Shur-Jen, Michele, Sabrina, Laurent-Philippe, Tanya, Liz, Tom, Seth, Karen, Edith, Pascale, George, Helen, Midori