Annotation Conf. Call 2019-01-08: Difference between revisions
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*Continued discussion of modeling questions | *Continued discussion of modeling questions | ||
*Generation and use of templates | *Generation and use of templates | ||
*Import of Reactome pathways | |||
==== Documentation ==== | ==== Documentation ==== |
Revision as of 12:17, 7 January 2019
Meeting URL
Agenda
2019 Plans
Annotation Group Priorities
Annotation Review
- Reports from pipeline
- Molecular Function refactor
- Transcription
- Annotation to regulation terms - what does GO mean by 'regulation'?
- Other methods to identify annotations to review
- Matrix
Metrics
- Tracking, reporting number of publications as a measure of information content
- Tracking changes to annotations over time
Topic-Specific Projects
- Tie-up an loose ends for existing signaling projects
- GPCR, JAK/STAT, Wnt
- Continue with additional signaling pathways
- Transcription
- Protein-containing complexes
GO-CAM/Noctua
- Continued discussion of modeling questions
- Generation and use of templates
- Import of Reactome pathways
Documentation
- Relations and their use in annotation and ontology development
- gp2term relations
- GO-CAM relations
- new relations in ontology development, e.g. describing participants in metabolic processes
PAINT
- Continue curation of families with at least one human gene
- Review families with new or revised experimental annotation
Pipeline
- Any questions or issues that groups are having?
- Finalize specs for new gpad/gpi file formats and transition to using these two files for internal consortium data exchange
- Literature tracking system - gather requirements
- Track curation status of papers
- Add comments to papers
Meetings
Conference Calls
- Tuesdays at 8am PDT
- 1st Tuesday: Alliance Biological Function
- 2nd Tuesday: GO Consortium
- 3rd Tuesday: GO-CAM Working Group
- 4th Tuesday: GO-CAM Working Group
- 5th Tuesday: Alliance Biological Function
- One Zoom URL for all - https://stanford.zoom.us/j/976175422
Consortium Meetings
- GOC meeting - Cambridge, UK April 11th - 13th (right after ISB meeting)
- GOC meeting - Berkeley, CA October 7th - 10th ???
- SAB
- GO user's meeting
Working Meetings
- Whole genome import - CA January 28th - February 1st
Minutes
- On call: