Annotation Conf. Call 2019-02-12: Difference between revisions

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= Minutes =
= Minutes =
*On call: Barbara, Chris, David, Dmitry, Dustin, Edith, Giulia, Helen, Harold, Karen, Kevin M, Kimberly, Li, Michele, Midori, Monika, Patrick N, Rob, Sabrina, Shur-Jen, Seth, Stacia, Suzi A, Tanya, Laurent-Philippe, Petra
*On call: Barbara, Chris, David, Dmitry, Dustin, Edith, Giulia, Helen, Harold, Karen, Kevin M, Kimberly, Li, Michele, Midori, Monika, Patrick N, Rob, Sabrina, Shur-Jen, Seth, Stacia, Suzi A, Tanya, Laurent-Philippe, Petra
== GOC Meeting, Cambridge, UK ==
*Hotel bloc available thru March 1st, so please reserve now if you need a room
*Meeting is Thursday and Friday, but Saturday could be reserved for working groups, if needed - please think about this!
*Registration fees will likely be <100 pounds and Val will look into coordinating payment through her department (otherwise - cash payment at the meeting)
== GOC Website ==
*Please check funding and contributors list for each group
*Report any other issues on the github helpdesk repo
== Ontology Requests - Enzymatic Activities ==
*When requesting a new enzymatic activity term, please check the [https://www.rhea-db.org/ Rhea database] for an appropriate xref and include that with your request
*Please also always include a PMID or other accession/identifier for a reference
*You can search Rhea using an EC
*Rhea is very comprehensive and detailed, but if you believe that the enzymatic activity you're looking for is not included, you can request a new entry from Rhea




Revision as of 09:39, 13 February 2019

Meeting URL

  • Please see the GO's Google calendar.
  • Contact Kimberly if you do not have access.

Agenda

GOC Meeting, Cambridge, UK

  • Thursday, April 11th and Friday, April 12th
  • 1/2 day shorter than our usual meetings
  • Logistics
  • Agenda - start Google doc?

New GOC Website

  • Congrats to all who worked on getting the new GOC website out to production
  • Any additional comments, feedback, questions?

Annotation Pipeline

  • Annotation reports on snapshot, current
  • Any comments, feedback, questions?

Ontology Requests

  • Ontology editors are collaborating with the Rhea database to align GO and Rhea (and Reactome).
  • For enzymatic activities, please check for an existing Rhea reaction xref and add to your request.

References for GO Annotations

GOC Progress Report

  • Reminder about PMC submission for all articles associated with the GOC grant progress report

GOC Hackathon - Berkeley, January 28th - February 1st

  • Working meeting held in Berkeley to develop SOP for importing a MOD's worth of GO annotation into Noctua as gene-centric GO-CAMs
  • Details on the outcome of this meeting will be presented on next week's GO-CAM call

Minutes

  • On call: Barbara, Chris, David, Dmitry, Dustin, Edith, Giulia, Helen, Harold, Karen, Kevin M, Kimberly, Li, Michele, Midori, Monika, Patrick N, Rob, Sabrina, Shur-Jen, Seth, Stacia, Suzi A, Tanya, Laurent-Philippe, Petra

GOC Meeting, Cambridge, UK

  • Hotel bloc available thru March 1st, so please reserve now if you need a room
  • Meeting is Thursday and Friday, but Saturday could be reserved for working groups, if needed - please think about this!
  • Registration fees will likely be <100 pounds and Val will look into coordinating payment through her department (otherwise - cash payment at the meeting)

GOC Website

  • Please check funding and contributors list for each group
  • Report any other issues on the github helpdesk repo

Ontology Requests - Enzymatic Activities

  • When requesting a new enzymatic activity term, please check the Rhea database for an appropriate xref and include that with your request
  • Please also always include a PMID or other accession/identifier for a reference
  • You can search Rhea using an EC
  • Rhea is very comprehensive and detailed, but if you believe that the enzymatic activity you're looking for is not included, you can request a new entry from Rhea
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