Annotation Conf. Call 2019-03-12: Difference between revisions

From GO Wiki
Jump to navigation Jump to search
mNo edit summary
 
(16 intermediate revisions by 3 users not shown)
Line 1: Line 1:
= Agenda =
= Agenda =
* Note that the US went on daylight savings this past weekend, so the time difference between the US and UK and Europe is now 4 and 5 hours, respectively.


== GOC Meeting, April 11th and 12th, Cambridge, UK ==
== GOC Meeting, April 11th and 12th, Cambridge, UK ==
Line 7: Line 9:
== Pipeline Reports ==
== Pipeline Reports ==
*Review [http://snapshot.geneontology.org/reports/index.html reports], rules
*Review [http://snapshot.geneontology.org/reports/index.html reports], rules
== Annotation Review ==
* [https://github.com/geneontology/go-annotation/issues/2279 InterPro2GO mapping to high-level 'do not annotate' terms]
* [https://github.com/geneontology/go-annotation/issues/2279 InterPro2GO mapping to high-level 'do not annotate' terms]
** These annotations were being flagged in QC/QA reports
** These annotations were being flagged in QC/QA reports
** [https://docs.google.com/spreadsheets/d/1Dk9ESmFX32u0gLH-IlSJRb0OJqrOQt26LJpmw1n9ryo/edit#gid=1290029287 Mappings in question]
** [https://docs.google.com/spreadsheets/d/1Dk9ESmFX32u0gLH-IlSJRb0OJqrOQt26LJpmw1n9ryo/edit#gid=1290029287 Mappings in question]
** InterPro has updated the mappings wherever possible
** InterPro has updated the mappings wherever possible
== Annotation Review ==
Stemming from work on this ontology ticket:  [https://github.com/geneontology/go-ontology/issues/15509 is an adaptor just another word for a scaffold protein?]
* structural molecule activity
** [https://github.com/geneontology/go-annotation/issues/2290 Review annotations to GO:0005198 structural molecule activity]
* molecular adaptor activity
** [https://github.com/geneontology/go-annotation/issues/2288 Review annotations to GO:0060090 molecular adaptor activity]
* Please check if you still have issues assigned to you: <code>is:issue is:open label:"annotation review" assignee:(your github handle)</code>


== GPAD/GPI Specifications ==
== GPAD/GPI Specifications ==
Line 20: Line 28:
** Use of SO/MSO to describe entities in gpi file
** Use of SO/MSO to describe entities in gpi file
*** Discussion on Alliance All-Hands call?
*** Discussion on Alliance All-Hands call?
** Expand gpi file to include all entities a group might use in annotation, e.g. variation IDs
** Other entities, e.g. variations? fish?
 
== Annotation Tracker ==
* Please review tickets you have entered
* If they can be closed, please do
* If they are unresolved or blocked, leave open


= Minutes =
= Minutes =
*On call:  
*On call: David, Dustin, Edith, Giulia, Harold, Helen, Karen, Kevin, Kimberly, Marie-Claire, Midori, Monika, Pascale, Patrick, Paul T, Rob, Sabrina, Seth, Stacia, Suzi A, Laurent-Philippe
 
== GOC Meeting, April 11th and 12th, Cambridge, UK ==
* Deadline for registering for meeting, and dinner if you want to attend, is Thursday, March 28th
 
== Pipeline Reports ==
* Please continue to check annotation reports
* Not all GO and annotation rules are fully incorporated into the reports, yet, but they will be at some point in the future
 
== Annotation Review ==
* Please review new tickets on adaptor, scaffold, and structural molecule activities
* Also, please check for any outstanding annotation review tickets to which you've been assigned
* We're aiming to close out as many tickets as feasible before the April meeting
 
== GPAD/GPI Specifications ==
* Specs are nearly ready; curators should start looking at them
* Other entities, e.g. variations, fish, may be added to the gpi file
** Please think about what other entities your group uses for curation so we can develop specs for including them
 
 






[[Category:Annotation Working Group]]
[[Category:Annotation Working Group]]

Latest revision as of 11:57, 12 March 2019

Agenda

  • Note that the US went on daylight savings this past weekend, so the time difference between the US and UK and Europe is now 4 and 5 hours, respectively.

GOC Meeting, April 11th and 12th, Cambridge, UK

Pipeline Reports

Annotation Review

Stemming from work on this ontology ticket: is an adaptor just another word for a scaffold protein?

GPAD/GPI Specifications

  • New specs are nearly ready
  • Outstanding issues:
    • Standardized headers
    • Use of SO/MSO to describe entities in gpi file
      • Discussion on Alliance All-Hands call?
    • Other entities, e.g. variations? fish?

Annotation Tracker

  • Please review tickets you have entered
  • If they can be closed, please do
  • If they are unresolved or blocked, leave open

Minutes

  • On call: David, Dustin, Edith, Giulia, Harold, Helen, Karen, Kevin, Kimberly, Marie-Claire, Midori, Monika, Pascale, Patrick, Paul T, Rob, Sabrina, Seth, Stacia, Suzi A, Laurent-Philippe

GOC Meeting, April 11th and 12th, Cambridge, UK

  • Deadline for registering for meeting, and dinner if you want to attend, is Thursday, March 28th

Pipeline Reports

  • Please continue to check annotation reports
  • Not all GO and annotation rules are fully incorporated into the reports, yet, but they will be at some point in the future

Annotation Review

  • Please review new tickets on adaptor, scaffold, and structural molecule activities
  • Also, please check for any outstanding annotation review tickets to which you've been assigned
  • We're aiming to close out as many tickets as feasible before the April meeting

GPAD/GPI Specifications

  • Specs are nearly ready; curators should start looking at them
  • Other entities, e.g. variations, fish, may be added to the gpi file
    • Please think about what other entities your group uses for curation so we can develop specs for including them