Annotation Conf. Call 2019-03-12: Difference between revisions
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** Use of SO/MSO to describe entities in gpi file | ** Use of SO/MSO to describe entities in gpi file | ||
*** Discussion on Alliance All-Hands call? | *** Discussion on Alliance All-Hands call? | ||
** Other entities, e.g. variations? | ** Other entities, e.g. variations? fish? | ||
== Annotation Tracker == | == Annotation Tracker == | ||
Line 36: | Line 36: | ||
= Minutes = | = Minutes = | ||
*On call: David, Harold, Karen, Kimberly, Marie-Claire, Midori, Patrick, Sabrina, Stacia, Suzi A | *On call: David, Dustin, Edith, Giulia, Harold, Helen, Karen, Kevin, Kimberly, Marie-Claire, Midori, Monika, Pascale, Patrick, Paul T, Rob, Sabrina, Seth, Stacia, Suzi A, Laurent-Philippe | ||
== GOC Meeting, April 11th and 12th, Cambridge, UK == | |||
* Deadline for registering for meeting, and dinner if you want to attend, is Thursday, March 28th | |||
== Pipeline Reports == | |||
* Please continue to check annotation reports | |||
* Not all GO and annotation rules are fully incorporated into the reports, yet, but they will be at some point in the future | |||
== Annotation Review == | |||
* Please review new tickets on adaptor, scaffold, and structural molecule activities | |||
* Also, please check for any outstanding annotation review tickets to which you've been assigned | |||
* We're aiming to close out as many tickets as feasible before the April meeting | |||
== GPAD/GPI Specifications == | |||
* Specs are nearly ready; curators should start looking at them | |||
* Other entities, e.g. variations, fish, may be added to the gpi file | |||
** Please think about what other entities your group uses for curation so we can develop specs for including them | |||
[[Category:Annotation Working Group]] | [[Category:Annotation Working Group]] |
Latest revision as of 11:57, 12 March 2019
Agenda
- Note that the US went on daylight savings this past weekend, so the time difference between the US and UK and Europe is now 4 and 5 hours, respectively.
GOC Meeting, April 11th and 12th, Cambridge, UK
Pipeline Reports
- Review reports, rules
- InterPro2GO mapping to high-level 'do not annotate' terms
- These annotations were being flagged in QC/QA reports
- Mappings in question
- InterPro has updated the mappings wherever possible
Annotation Review
Stemming from work on this ontology ticket: is an adaptor just another word for a scaffold protein?
- structural molecule activity
- molecular adaptor activity
- Please check if you still have issues assigned to you:
is:issue is:open label:"annotation review" assignee:(your github handle)
GPAD/GPI Specifications
- New specs are nearly ready
- Outstanding issues:
- Standardized headers
- Use of SO/MSO to describe entities in gpi file
- Discussion on Alliance All-Hands call?
- Other entities, e.g. variations? fish?
Annotation Tracker
- Please review tickets you have entered
- If they can be closed, please do
- If they are unresolved or blocked, leave open
Minutes
- On call: David, Dustin, Edith, Giulia, Harold, Helen, Karen, Kevin, Kimberly, Marie-Claire, Midori, Monika, Pascale, Patrick, Paul T, Rob, Sabrina, Seth, Stacia, Suzi A, Laurent-Philippe
GOC Meeting, April 11th and 12th, Cambridge, UK
- Deadline for registering for meeting, and dinner if you want to attend, is Thursday, March 28th
Pipeline Reports
- Please continue to check annotation reports
- Not all GO and annotation rules are fully incorporated into the reports, yet, but they will be at some point in the future
Annotation Review
- Please review new tickets on adaptor, scaffold, and structural molecule activities
- Also, please check for any outstanding annotation review tickets to which you've been assigned
- We're aiming to close out as many tickets as feasible before the April meeting
GPAD/GPI Specifications
- Specs are nearly ready; curators should start looking at them
- Other entities, e.g. variations, fish, may be added to the gpi file
- Please think about what other entities your group uses for curation so we can develop specs for including them