Annotation Conf. Call 2019-05-14

Agenda

GOC meeting debrief/announcements

Communication

• Remind people about Gitter as an option to communicate with other curators

Transcription Factor Annotations

• TF annotations: All: People will need to migrate transcription factor annotations to specific TF binding terms to use GO+SO extensions

Only 2 terms found in SO so far:

|| EXP annotations || GO term || SO term | 114 | GO:0070888 E-box binding | SO:0001158 E_box_motif | 12 | GO:0035497 cAMP response element binding | SO:0001843 CRE | 10 | GO:0034056 estrogen response element binding | | 3 | GO:0035538 carbohydrate response element binding | | 2 | GO:0070594 juvenile hormone response element binding | | 3 | GO:0071820 N-box binding | | 8 | GO:0044323 retinoic acid-responsive element binding | | 5 | GO:0010736 serum response element binding | | 4 | GO:0032810 sterol response element binding | | 5 | GO:0070644 vitamin D response element binding|

PAINT

• Remind people they can provide guidance for PAINT annotation: PAINT Annotations: to prevent over-propagation to paralogs: submit GitHub tickets explaining that the list of gene products associated with this process is complete and that paralogs should not be associated with the term.

Annotation Pipelines

• Annotation pipelines and guidelines: We'd like to have information about each group's annotation guidelines and how annotations are processes and presented/exporter to users.

MOD Import into Noctua

• MGI and WB are working on a pipeline to import all of their manual annotations into Noctua

Minutes

• Present: