Annotation Conf. Call 2019-05-14: Difference between revisions

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Only 2 terms found in SO so far:  
Only 2 terms found in SO so far:  


|| EXP annotations || GO term || SO term  
{|  
|-
! EXP annotations  
! GO term  
! SO term  
|-
| 114 | GO:0070888 E-box binding | SO:0001158 E_box_motif  
| 114 | GO:0070888 E-box binding | SO:0001158 E_box_motif  
|-
| 12 | GO:0035497 cAMP response element binding | SO:0001843 CRE
| 12 | GO:0035497 cAMP response element binding | SO:0001843 CRE
|-
| 10 | GO:0034056 estrogen response element binding |  
| 10 | GO:0034056 estrogen response element binding |  
|-
| 3 | GO:0035538 carbohydrate response element binding |
| 3 | GO:0035538 carbohydrate response element binding |
|-
| 2 | GO:0070594 juvenile hormone response element binding |  
| 2 | GO:0070594 juvenile hormone response element binding |  
|-
| 3 | GO:0071820 N-box binding |  
| 3 | GO:0071820 N-box binding |  
|-
| 8 | GO:0044323 retinoic acid-responsive element binding |  
| 8 | GO:0044323 retinoic acid-responsive element binding |  
|-
| 5 | GO:0010736 serum response element binding |  
| 5 | GO:0010736 serum response element binding |  
|-
| 4 | GO:0032810 sterol response element binding |  
| 4 | GO:0032810 sterol response element binding |  
|-
| 5 | GO:0070644 vitamin D response element binding|
| 5 | GO:0070644 vitamin D response element binding|
|}


=== PAINT ===
=== PAINT ===

Revision as of 02:10, 14 May 2019

Agenda

GOC meeting debrief/announcements

Communication

  • Remind people about Gitter as an option to communicate with other curators

Transcription Factor Annotations

  • TF annotations: All: People will need to migrate transcription factor annotations to specific TF binding terms to use GO+SO extensions

Only 2 terms found in SO so far:

 EXP annotations GO term SO term
GO:0070888 E-box binding | SO:0001158 E_box_motif
GO:0035497 cAMP response element binding | SO:0001843 CRE
GO:0034056 estrogen response element binding |
GO:0035538 carbohydrate response element binding |
GO:0070594 juvenile hormone response element binding |
GO:0071820 N-box binding |
GO:0044323 retinoic acid-responsive element binding |
GO:0010736 serum response element binding |
GO:0032810 sterol response element binding |
GO:0070644 vitamin D response element binding|

PAINT

  • Remind people they can provide guidance for PAINT annotation: PAINT Annotations: to prevent over-propagation to paralogs: submit GitHub tickets explaining that the list of gene products associated with this process is complete and that paralogs should not be associated with the term.

Annotation Pipelines

  • Annotation pipelines and guidelines: We'd like to have information about each group's annotation guidelines and how annotations are processes and presented/exporter to users.

MOD Import into Noctua

  • MGI and WB are working on a pipeline to import all of their manual annotations into Noctua

Minutes

  • Present:
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