Annotation Conf. Call 2019-08-13

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Agenda

October GOC Meeting - Berkeley

Protein oligomerization terms in GO

  • Check on how the review of BP terms is going
  • Will start on MF terms, specifically 'protein dimerization activity' GO:0046983

GO-CAMs and Annotation Extensions

  • After USC hackathon in June, we formed a small working group to fully articulate the GO-CAM model specifications
  • This will allow for consistent GO-CAM curation using Noctua workbenches, import projects (e.g. Reactome and MOD imports)
  • Will also allow us to move forward with harmonizing AE relations used in GO-CAM and conventional annotation
    • On today's call, we will review the annotation extension relations currently used with MF terms and the proposed updates to their use in order to align conventional annotation and GO-CAM models
    • Google summary spreadsheet of MF extensions
      • To review:
        • part_of (GO:CC, CL, UBERON)
        • happens_during (GO:BP (that is not a biological phase))
        • has_input (can review existing has_input to see if NOT direct; refer to previous github ticket for now)

Minutes

  • Present: