Annotation Conf. Call 2019-09-24: Difference between revisions
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** Some relations are in the Relations Ontology (RO), others have just been in gorel (relations only used in the Gene Ontology) | ** Some relations are in the Relations Ontology (RO), others have just been in gorel (relations only used in the Gene Ontology) | ||
** Trying to move towards using only RO relations, using a smaller set of relations to make curation easier (but still maintain accurate representation of the biology) | ** Trying to move towards using only RO relations, using a smaller set of relations to make curation easier (but still maintain accurate representation of the biology) | ||
* Biological Process | * [https://docs.google.com/spreadsheets/d/1okodOSG7mWgS8ZE8T95XjPr0-9G1vEIkAy2BkipEfRw Biological Process] | ||
* Molecular Function | * [https://docs.google.com/spreadsheets/d/1DuON03hEfEDDC7_6CCnnR3JcBA4ltQgGFP0otAeMZKs Molecular Function] | ||
* Cellular Component | * [https://docs.google.com/spreadsheets/d/17LcW5v4mX18jJjAXfXethJnnI0cTg--PZUGXtV7NWsY Cellular Component] | ||
== Ontology Updates and Annotation Reviews == | == Ontology Updates and Annotation Reviews == | ||
Revision as of 11:53, 23 September 2019
Agenda
October GOC Meeting - Berkeley
Pipeline
- There have been some glitches with the GOC pipeline.
- New ontology terms may not be available for use yet.
- Software team is aware of the issues and working on restoring the pipeline to its regular schedule.
- Any updates here?
GO-CAMs and Annotation Extensions
- Update on relations allowed for GO-CAM as specified in ShEx (Shape Expressions)
- Approach:
- Examine relations used in GO
- Annotations extensions
- Ontology
- Some relations are in the Relations Ontology (RO), others have just been in gorel (relations only used in the Gene Ontology)
- Trying to move towards using only RO relations, using a smaller set of relations to make curation easier (but still maintain accurate representation of the biology)
- Examine relations used in GO
- Biological Process
- Molecular Function
- Cellular Component
Ontology Updates and Annotation Reviews
Protein multimerization terms
- How are the reviews going?
- Next terms up: protein homodimerization, protein heterodimerization (non-IPI evidence codes)
Minutes
- Present: