Annotation Conf. Call 2020-01-21

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Agenda and Minutes

  • Present:

Pipeline

  • gp2protein, gp2rna, gp_unlocalized files
    • plan is to retire these from GOC, but want to double-check if there is any use for these files that would require GOC to keep them
  • Announcement sent to go-friends, 2020-01-16
  • Summary of ticket:
    • the GOC pipeline is not using gp2protein files for any data processing
    • a gene/gene product identifier mapping file would be of use to the broader scientific community, but the exact file format and who should produce and distribute it, remains to be determined
    • form a working group of representatives from the Alliance and other databases to develop a common standard here?
      • GO's gpi file format might be a good place to start

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