Annotation Conf. Call 2021-01-19: Difference between revisions
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* [https://docs.google.com/spreadsheets/d/1T3L7ewlKXvJGtw3J3GQwZh9NxfqiCw6I0jqpg2kUlAU/edit#gid=0 Files produced and consumed by groups] | * [https://docs.google.com/spreadsheets/d/1T3L7ewlKXvJGtw3J3GQwZh9NxfqiCw6I0jqpg2kUlAU/edit#gid=0 Files produced and consumed by groups] | ||
* [https://docs.google.com/spreadsheets/d/1qNxl7XQl9lSf8NKu55t1-9y4EicIDLjYaoBTtCT1cgs/edit#gid=0 Default GAF 2.2 relations, curation status, tools] | * [https://docs.google.com/spreadsheets/d/1qNxl7XQl9lSf8NKu55t1-9y4EicIDLjYaoBTtCT1cgs/edit#gid=0 Default GAF 2.2 relations, curation status, tools] | ||
* AI: Questions for Seth - testing GAF 2.2 files; groups have put test files in [https://github.com/geneontology/go-site/issues/1562 the GAF 2.2 testing github ticket] | |||
* AI: Discuss with Seth use of new relations in GPAD 1.2 as a way of moving us forward with GAF 2.2 more efficiently | |||
== Annotation Relations == | == Annotation Relations == | ||
*Use of 'has input' in place of 'has regulation target', 'regulates expression of', 'regulates transcription of', regulates translation of' | * Use of 'has input' in place of 'has regulation target', 'regulates expression of', 'regulates transcription of', regulates translation of' | ||
* AI: create a ticket for updating these relations; set up a separate meeting with Alex to review changes to annotations (and other things, like file formats) | |||
* AI: may need to review other uses of 'has input' on AE BP relations, e.g. with signaling pathway terms; Helen will look into her FB spreadsheet for examples to discuss | |||
== GOC Meetings == | == GOC Meetings == | ||
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*January 26th - GO-CAM Office Hours | *January 26th - GO-CAM Office Hours | ||
== Other issues == | |||
* Malcolm raised the issue of formatting for Xenbase gene identifiers in the table for browsing GO-CAMs on the GO site | |||
* AI: add a ticket to the github noctua tracker | |||
= Attendance = | = Attendance = | ||
* On call: Chris, Colin, David, Debby,Dmitry, Dustin, Edith, Giulia, Harold, Helen, Judy, Karen, Kimberly, Li, Malcolm, Midori, Pascale, Petra, Rob, Sabrina, Stacia, Suzi A, Ruth | * On call: Chris, Colin, David, Debby, Dmitry, Dustin, Edith, Giulia, Harold, Helen, Judy, Karen, Kimberly, Li, Malcolm, Midori, Pascale, Petra, Rob, Sabrina, Stacia, Suzi A, Ruth | ||
[[Category:Annotation Working Group]] | [[Category:Annotation Working Group]] |
Latest revision as of 12:57, 19 January 2021
Agenda and Minutes
GAF 2.2
- Discussion of where each group is at, any remaining issues to address
- Files produced and consumed by groups
- Default GAF 2.2 relations, curation status, tools
- AI: Questions for Seth - testing GAF 2.2 files; groups have put test files in the GAF 2.2 testing github ticket
- AI: Discuss with Seth use of new relations in GPAD 1.2 as a way of moving us forward with GAF 2.2 more efficiently
Annotation Relations
- Use of 'has input' in place of 'has regulation target', 'regulates expression of', 'regulates transcription of', regulates translation of'
- AI: create a ticket for updating these relations; set up a separate meeting with Alex to review changes to annotations (and other things, like file formats)
- AI: may need to review other uses of 'has input' on AE BP relations, e.g. with signaling pathway terms; Helen will look into her FB spreadsheet for examples to discuss
GOC Meetings
- May - will likely be another virtual meeting
- January 26th - GO-CAM Office Hours
Other issues
- Malcolm raised the issue of formatting for Xenbase gene identifiers in the table for browsing GO-CAMs on the GO site
- AI: add a ticket to the github noctua tracker
Attendance
- On call: Chris, Colin, David, Debby, Dmitry, Dustin, Edith, Giulia, Harold, Helen, Judy, Karen, Kimberly, Li, Malcolm, Midori, Pascale, Petra, Rob, Sabrina, Stacia, Suzi A, Ruth