Annotation Conf. Call 2021-01-19: Difference between revisions

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* [https://docs.google.com/spreadsheets/d/1T3L7ewlKXvJGtw3J3GQwZh9NxfqiCw6I0jqpg2kUlAU/edit#gid=0 Files produced and consumed by groups]
* [https://docs.google.com/spreadsheets/d/1T3L7ewlKXvJGtw3J3GQwZh9NxfqiCw6I0jqpg2kUlAU/edit#gid=0 Files produced and consumed by groups]
* [https://docs.google.com/spreadsheets/d/1qNxl7XQl9lSf8NKu55t1-9y4EicIDLjYaoBTtCT1cgs/edit#gid=0 Default GAF 2.2 relations, curation status, tools]
* [https://docs.google.com/spreadsheets/d/1qNxl7XQl9lSf8NKu55t1-9y4EicIDLjYaoBTtCT1cgs/edit#gid=0 Default GAF 2.2 relations, curation status, tools]
* AI: Questions for Seth - testing GAF 2.2 files; groups have put test files in [https://github.com/geneontology/go-site/issues/1562 the GAF 2.2 testing github ticket]
* AI: Discuss with Seth use of new relations in GPAD 1.2 as a way of moving us forward with GAF 2.2 more efficiently


== Annotation Relations ==
== Annotation Relations ==
*Use of 'has input' in place of 'has regulation target', 'regulates expression of', 'regulates transcription of', regulates translation of'
* Use of 'has input' in place of 'has regulation target', 'regulates expression of', 'regulates transcription of', regulates translation of'
* AI: create a ticket for updating these relations; set up a separate meeting with Alex to review changes to annotations (and other things, like file formats)
* AI: may need to review other uses of 'has input' on AE BP relations, e.g. with signaling pathway terms; Helen will look into her FB spreadsheet for examples to discuss


== GOC Meetings ==
== GOC Meetings ==
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*January 26th - GO-CAM Office Hours
*January 26th - GO-CAM Office Hours
== Other issues ==
* Malcolm raised the issue of formatting for Xenbase gene identifiers in the table for browsing GO-CAMs on the GO site
* AI: add a ticket to the github noctua tracker


= Attendance =
= Attendance =
* On call: Chris, Colin, David, Debby,Dmitry, Dustin, Edith, Giulia, Harold, Helen, Judy, Karen, Kimberly, Li, Malcolm, Midori, Pascale, Petra, Rob, Sabrina, Stacia, Suzi A, Ruth
* On call: Chris, Colin, David, Debby, Dmitry, Dustin, Edith, Giulia, Harold, Helen, Judy, Karen, Kimberly, Li, Malcolm, Midori, Pascale, Petra, Rob, Sabrina, Stacia, Suzi A, Ruth


[[Category:Annotation Working Group]]
[[Category:Annotation Working Group]]

Latest revision as of 12:57, 19 January 2021

Agenda and Minutes

GAF 2.2

Annotation Relations

  • Use of 'has input' in place of 'has regulation target', 'regulates expression of', 'regulates transcription of', regulates translation of'
  • AI: create a ticket for updating these relations; set up a separate meeting with Alex to review changes to annotations (and other things, like file formats)
  • AI: may need to review other uses of 'has input' on AE BP relations, e.g. with signaling pathway terms; Helen will look into her FB spreadsheet for examples to discuss

GOC Meetings

  • May - will likely be another virtual meeting
  • January 26th - GO-CAM Office Hours

Other issues

  • Malcolm raised the issue of formatting for Xenbase gene identifiers in the table for browsing GO-CAMs on the GO site
  • AI: add a ticket to the github noctua tracker

Attendance

  • On call: Chris, Colin, David, Debby, Dmitry, Dustin, Edith, Giulia, Harold, Helen, Judy, Karen, Kimberly, Li, Malcolm, Midori, Pascale, Petra, Rob, Sabrina, Stacia, Suzi A, Ruth