Annotation Conf. Call 2021-02-16: Difference between revisions

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** Known issue with annotation extensions, [https://github.com/geneontology/go-site/pull/1618 PR] to address that
** Known issue with annotation extensions, [https://github.com/geneontology/go-site/pull/1618 PR] to address that
* March release is still slated to be on time (first week of March)
* March release is still slated to be on time (first week of March)
* ''Q: If GAF2.2 files where the presence of gp2term relations is not uniform, i.e. some lines have gp2term relations and others don't, what happens to the file?''
** ''A: The checks for relations act on a line-by-line basis, so lines without a relation will be repaired rather than being tossed out, or the whole file failing QC checks.''


== GOC Meetings ==
== GOC Meetings ==

Revision as of 19:22, 16 February 2021

Agenda and Minutes

GAF 2.2

  • Discussion of where each group is at, any remaining issues to address
  • GPAD 1.2 produced by GOC pipeline will use full set of gp2term relations as a way of moving us forward with GAF 2.2 more efficiently
  • The pipeline has now switched over to consuming and generating GAF2.2 files for snapshot releases
  • Testing files to ensure all is working okay - relevant github ticket
    • Known issue with annotation extensions, PR to address that
  • March release is still slated to be on time (first week of March)
  • Q: If GAF2.2 files where the presence of gp2term relations is not uniform, i.e. some lines have gp2term relations and others don't, what happens to the file?
    • A: The checks for relations act on a line-by-line basis, so lines without a relation will be repaired rather than being tossed out, or the whole file failing QC checks.

GOC Meetings

  • Virtual Consortium Meeting -Monday May 3rd -Thurs May 6th
    • Agenda/Minutes - please suggest topics for discussion and/or breakout groups
  • Next week (week of February 23rd) is a GO-CAM Office Hours call

Ontology Editors Jamboree

Attendance

  • On call: Chris, David, Dmitry, Dustin, Giulia, Harold, Helen, Karen, Kimberly, Li, Malcolm, Mary, Midori, Pascale, Patrick, Paul, Petra, Raymond, Rob, Ruth, Sabrina, Seth, Suzi, Tanya, Val