Annotation Conf. Call 2021-02-16

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Agenda and Minutes

GAF 2.2

  • Discussion of where each group is at, any remaining issues to address
  • GPAD 1.2 produced by GOC pipeline will use full set of gp2term relations as a way of moving us forward with GAF 2.2 more efficiently
  • The pipeline has now switched over to consuming and generating GAF2.2 files for snapshot releases
  • Testing files to ensure all is working okay - relevant github ticket
    • Known issue with annotation extensions, PR to address that
  • March release is still slated to be on time (first week of March)
  • Q: If GAF2.2 files where the presence of gp2term relations is not uniform, i.e. some lines have gp2term relations and others don't, what happens to the file?
    • A: The checks for relations act on a line-by-line basis, so lines without a relation will be repaired rather than being tossed out, or the whole file failing QC checks.
  • Q: What is the status of the GOA monthly release?
    • A: The GOA release started on Friday, February 12th; it should be out very soon.
  • Q: Do groups need to change the URL they provide to GO for picking up the new GAF2.2 files?
    • A: From GO's perspective, it doesn't matter. The pipeline will pick up whatever file is listed in the datasets.yaml. One thing to keep in mind, though, is that other users may be retrieving the new GAF files from various other places (e.g. MOD ftp sites) and so if groups know who is using their GAFs, it would be a good idea to contact those users directly, in addition to the emails that GO has sent to the go-friends and go-announce lists.

GOC Meetings

  • Virtual Consortium Meeting -Monday May 3rd -Thurs May 6th
    • Agenda/Minutes - please suggest topics for discussion and/or breakout groups
  • Next week (week of February 23rd) is a GO-CAM Office Hours call

Ontology Editors Jamboree


  • On call: Chris, David, Dmitry, Dustin, Giulia, Harold, Helen, Karen, Kimberly, Li, Malcolm, Mary, Midori, Pascale, Patrick, Paul, Petra, Raymond, Rob, Ruth, Sabrina, Seth, Suzi, Tanya, Val