Annotation Conf. Call 2021-11-02
Agenda and Minutes
Meetings and Announcements
October Consortium Meeting - SURVEY
- There is a post-meeting survey to help plan successful future meetings:
https://forms.gle/vuk4zmKKSF1HVdn26
- Please give your feedback
No GO Calls Week - November 8th
Noctua Maintenance Outage - Thursday, November 11th
Annotation Issues
Annotation Extension Relations
Review Documentation Feedback from GOC Meeting
- Main points:
- 'has input' and 'has output' are meant to capture specific, biologically relevant entities
- the overall goals are to: 1) continue to develop a biological knowledgebase of interconnected entities and 2) capture specificity beyond what is currently in the ontology
- Please help to provide additional examples as you come across them, especially for cases that we may not have covered already.
- A note on ChEBI: if you use ChEBI to capture chemical entities, you may want to confirm classification(s) both in ChEBI and GO. Rhea is also an excellent resource.
- AI: Provide more detailed documentation on using correct ChEBI ids for annotation, ontology development.
- AI: Have a follow-up annotation review and call on use of metal ions in 'has input' extensions.
Migrating some CACAO Annotations
- Some CACAO annotations will be migrated to Protein2GO so other groups can have edit permission and help maintain them
- We need to make sure that all relevant groups have at least one Protein2GO account so they can do this
- At some point in the future, we will think about migrating CACAO annotations to Noctua
Attendance
- On call: Alex, Chris, David, Deborah, Dmitry, Dustin, Edith, Giulia, Harold, Helen, Jolene, Karen, Kimberly, Malcolm, Midori, Pascale, Raymond, Rob, Seth, Stacia, Suzi, Petra