Annotation Conf. Call 2022-07-05: Difference between revisions
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=== Fall 2022 Consortium Meeting === | === Fall 2022 Consortium Meeting === | ||
* Likely at Caltech, October 11th - 13th | * Likely at Caltech, October 11th - 13th | ||
* | * Survey from Pascale went out June 22nd | ||
=== Noctua === | === Noctua === | ||
| Line 13: | Line 13: | ||
== GO Release Pipeline == | == GO Release Pipeline == | ||
* June release is out as of June 15th | * June release is out as of June 15th | ||
* July release | * July release is finished? | ||
== AmiGO == | == AmiGO == | ||
| Line 22: | Line 22: | ||
*Proposal to obsolete and reorganize CC ontology for membrane annotations | *Proposal to obsolete and reorganize CC ontology for membrane annotations | ||
** Capturing membrane protein topology will no longer be under the purview of GO annotation | ** Capturing membrane protein topology will no longer be under the purview of GO annotation | ||
** [https://github.com/geneontology/go-annotation/issues/4187 Review 'integral to membrane protein annotations'] | ** Some ontology work left to do, but curators are still encouraged to look at the spreadsheet to make sure they understand what will happen to the annotations | ||
*** [https://github.com/geneontology/go-annotation/issues/4187 Review 'integral to membrane protein annotations'] | |||
*** [https://docs.google.com/document/d/1xSUmYaBmP0PA9VUAqIYZtHO6pidF-Zk3xqhcoN9p-mo/edit SOP] for examining topology and GO CC annotations in UniProtKB | *** [https://docs.google.com/document/d/1xSUmYaBmP0PA9VUAqIYZtHO6pidF-Zk3xqhcoN9p-mo/edit SOP] for examining topology and GO CC annotations in UniProtKB | ||
===Cell cortex definition=== | ===Cell cortex definition and annotations=== | ||
*https://github.com/geneontology/go-ontology/issues/23429 | *https://github.com/geneontology/go-ontology/issues/23429 | ||
*We'll come up with a list of CC terms to review as there are slightly overlapping concepts in the ontology | |||
** cytoplasmic side of plasma membrane vs cell periphery vs cell cortex | |||
*Will devote future annotation calls (~September) to discuss this | |||
*Curators can, over the summer, collect examples and supporting evidence sentences used for annotation | |||
== Annotation == | == Annotation == | ||
=== Annotation error reports and annotation review === | === Annotation error reports and annotation review === | ||
| Line 39: | Line 41: | ||
== GO-CAM and Noctua == | == GO-CAM and Noctua == | ||
* Software updates | |||
** Model copy functionality | |||
*** Currently on noctua-dev; has been tested by David, Pascale, Paul, Kimberly, Swiss-Prot curators | |||
** Plan to put into production soon (if not today, then within the next day or two) | |||
** Quick demo | |||
== Other Projects == | == Other Projects == | ||
| Line 45: | Line 52: | ||
== Attendees == | == Attendees == | ||
*On call: | *On call: Chris, David, Deborah, Dustin, Edith, Giulia, Harold, Helen, Kimberly, Leonore, Malcolm, Mary, Pascale, Patrick, Petra, Raymond, Rob, Seth, Sierra, Suzi | ||
[[Category:Annotation Working Group]] | [[Category:Annotation Working Group]] | ||
Latest revision as of 11:49, 5 July 2022
Agenda and Minutes
Meetings and Announcements
Fall 2022 Consortium Meeting
- Likely at Caltech, October 11th - 13th
- Survey from Pascale went out June 22nd
Noctua
- Regularly scheduled Noctua outage:
- Thursday, July 14th and 28th
GO Release Pipeline
- June release is out as of June 15th
- July release is finished?
AmiGO
Ontology
Membrane CC Terms
- Proposal to obsolete and reorganize CC ontology for membrane annotations
- Capturing membrane protein topology will no longer be under the purview of GO annotation
- Some ontology work left to do, but curators are still encouraged to look at the spreadsheet to make sure they understand what will happen to the annotations
- Review 'integral to membrane protein annotations'
- SOP for examining topology and GO CC annotations in UniProtKB
Cell cortex definition and annotations
- https://github.com/geneontology/go-ontology/issues/23429
- We'll come up with a list of CC terms to review as there are slightly overlapping concepts in the ontology
- cytoplasmic side of plasma membrane vs cell periphery vs cell cortex
- Will devote future annotation calls (~September) to discuss this
- Curators can, over the summer, collect examples and supporting evidence sentences used for annotation
Annotation
Annotation error reports and annotation review
- Please remember to keep checking the reports generated by the pipeline and address any errors
- Also check annotation review tickets assigned to you/your group in go-annotation repo on github
- Questions about either - please bring to the meeting
GO-CAM and Noctua
- Software updates
- Model copy functionality
- Currently on noctua-dev; has been tested by David, Pascale, Paul, Kimberly, Swiss-Prot curators
- Plan to put into production soon (if not today, then within the next day or two)
- Quick demo
- Model copy functionality
Other Projects
Attendees
- On call: Chris, David, Deborah, Dustin, Edith, Giulia, Harold, Helen, Kimberly, Leonore, Malcolm, Mary, Pascale, Patrick, Petra, Raymond, Rob, Seth, Sierra, Suzi