Annotation Conf. Call 2022-08-16: Difference between revisions
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Added many MFs for histone modifications - | Added many MFs for histone modifications - | ||
* '''histone acetyltransferase activity''' | * '''histone acetyltransferase activity''' | ||
* 'histone H2A acetyltransferase activity' | ** 'histone H2A acetyltransferase activity' | ||
** 'histone H2AK5 acetyltransferase activity' | *** 'histone H2AK5 acetyltransferase activity' | ||
**'histone H2AK9 acetyltransferase activity' | ***'histone H2AK9 acetyltransferase activity' | ||
* 'histone H2B acetyltransferase activity' | ** 'histone H2B acetyltransferase activity' | ||
**'histone H2BK12 acetyltransferase activity' | ***'histone H2BK12 acetyltransferase activity' | ||
**'histone H2BK5 acetyltransferase activity' | ***'histone H2BK5 acetyltransferase activity' | ||
* 'histone H3 acetyltransferase activity' | ** 'histone H3 acetyltransferase activity' | ||
**'histone H3K14 acetyltransferase activity' | ***'histone H3K14 acetyltransferase activity' | ||
**'histone H3K18 acetyltransferase activity' | ***'histone H3K18 acetyltransferase activity' | ||
**'histone H3K23 acetyltransferase activity' | ***'histone H3K23 acetyltransferase activity' | ||
**'histone H3K27 acetyltransferase activity' | ***'histone H3K27 acetyltransferase activity' | ||
**'histone H3K36 acetyltransferase activity' | ***'histone H3K36 acetyltransferase activity' | ||
**'histone H3K4 acetyltransferase activity' | ***'histone H3K4 acetyltransferase activity' | ||
**'histone H3K56 acetyltransferase activity' | ***'histone H3K56 acetyltransferase activity' | ||
**'histone H3K72 acetyltransferase activity' | ***'histone H3K72 acetyltransferase activity' | ||
**'histone H3K9 acetyltransferase activity' | ***'histone H3K9 acetyltransferase activity' | ||
* 'histone H4 acetyltransferase activity' | ** 'histone H4 acetyltransferase activity' | ||
* '''histone methyltransferase activity''' | * '''histone methyltransferase activity''' |
Revision as of 10:00, 16 August 2022
Agenda and Minutes
Meetings and Announcements
Fall 2022 Consortium Meeting
- In person with remote accommodation
- At Caltech, Pasadena, CA, Tuesday, October 11th - Thursday, October 13th
- Will send out registration form soon
- Please think about agenda items and breakout group topics
Noctua
- Next regularly scheduled Noctua outage:
- Thursday, September 8th
GO Release Pipeline
- August release still pending?
AmiGO
Ontology
Histone modifications
Added many MFs for histone modifications -
- histone acetyltransferase activity
- 'histone H2A acetyltransferase activity'
- 'histone H2AK5 acetyltransferase activity'
- 'histone H2AK9 acetyltransferase activity'
- 'histone H2B acetyltransferase activity'
- 'histone H2BK12 acetyltransferase activity'
- 'histone H2BK5 acetyltransferase activity'
- 'histone H3 acetyltransferase activity'
- 'histone H3K14 acetyltransferase activity'
- 'histone H3K18 acetyltransferase activity'
- 'histone H3K23 acetyltransferase activity'
- 'histone H3K27 acetyltransferase activity'
- 'histone H3K36 acetyltransferase activity'
- 'histone H3K4 acetyltransferase activity'
- 'histone H3K56 acetyltransferase activity'
- 'histone H3K72 acetyltransferase activity'
- 'histone H3K9 acetyltransferase activity'
- 'histone H4 acetyltransferase activity'
- 'histone H2A acetyltransferase activity'
- histone methyltransferase activity
- 'histone arginine N-methyltransferase activity'
- 'histone H2AR3 methyltransferase activity'
- 'histone H3R17 methyltransferase activity'
- 'histone H3R2 methyltransferase activity'
- 'histone H3R8 methyltransferase activity'
- 'histone H4R3 methyltransferase activity'
- 'histone glutamine N-methyltransferase activity'
- 'histone lysine N-methyltransferase activity'
- 'histone H3K27 methyltransferase activity'
- 'histone H3K36 methyltransferase activity'
- 'histone H3K37 methyltransferase activity'
- 'histone H3K4 methyltransferase activity'
- 'histone H3K56 methyltransferase activity'
- 'histone H3K79 methyltransferase activity'
- 'histone H3K9 methyltransferase activity'
- 'histone H4K20 methyltransferase activity'
- 'histone arginine N-methyltransferase activity'
Annotation
Review of histone modification annotations
- Annotation review spreadsheet: https://docs.google.com/spreadsheets/d/1LJTu3sZjwH7u3sD65KXf_e-l3A85cRKpeiYh2DVsRgg/edit#gid=1052081963
- Grouped by
- Is in a Panther family that is one of the 134 enzymes? -> yellow
- Is in a Panther family annotated to dbTF? -> blue
- Is GO annotated to coTF or a descendant -> green
- In more than one category -> purple
Annotation error reports and annotation review
- Please remember to keep checking the reports generated by the pipeline and address any errors
- Also check annotation review tickets assigned to you/your group in go-annotation repo on github
- Questions about either - please bring to the meeting
GO-CAM and Noctua
Other Projects
Attendees
- On call: