Annotation Conf. Call 2022-11-22: Difference between revisions

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*[https://docs.google.com/spreadsheets/d/1E-iKsWfinL_KP5cTXdwayIKPZ6RfJKl5KfvOkf9EoHk Extrinsic component of membrane]
*[https://docs.google.com/spreadsheets/d/1E-iKsWfinL_KP5cTXdwayIKPZ6RfJKl5KfvOkf9EoHk Extrinsic component of membrane]


Contributor (Assigned by)
**Contributor (Assigned by)
* ARUK-UCL 6
** ARUK-UCL 6
* BHF-UCL 13
** BHF-UCL 13
* ParkinsonsUK-UCL 4
** ParkinsonsUK-UCL 4
* SynGO-UCL 3
** SynGO-UCL 3
* CAFA 1
** CAFA 1
* CGD 1
** CGD 1
* EcoCyc 3
** EcoCyc 3
* EcoliWiki 6
** EcoliWiki 6
* GeneDB 4
** GeneDB 4
* PomBase 5
** PomBase 5
* RGD 9
** RGD 9
* SynGO 82
** SynGO 82
* UniProt 146
** UniProt 146
* WB 2
** WB 2


=== Annotation error reports and annotation review ===
=== Annotation error reports and annotation review ===

Revision as of 12:12, 22 November 2022

Agenda and Minutes

Meetings and Announcements

Noctua

  • Next regularly scheduled Noctua outage:

Spring GOC Meeting Plans

  • Survey - please reply
    • Padua, Italy - late April, before the ISB meeting
      • Another Italy option - the two days after the ISB (this was not on the original survey, but is now also an option) - email Pascale if you have strong feelings one way or the other wrt before/after the ISB meeting
    • Baltimore, MD - late May/early June (two options)

GO Release Pipeline

  • November release out on November 3rd
    • Encourage people to check #release-pipeline channel on Slack for up-to-date info
  • If your group changes any practice that would alter significantly the number of annotations, please let Pascale know
  • Next release in Dec should have IBAs from new PANTHER 17.0. Breakdown of changes by GAF file: https://docs.google.com/spreadsheets/d/1ShFwfNGk67v9XKj9COVPdHGaUfqIICtMi7wY-wkFcfY/edit#gid=1051461976
    • Drop of 7.91% (-316642 IBAs) compared to previous IBA release 2022-09-26. A significant portion of this drop (2.95 of the 7.91%) is due to a code change that removes redundant IBAs, meaning generic term annotations were dropped when a more specific term annotation exists.

AmiGO

Ontology

Annotation

Annotation Reviews

    • Contributor (Assigned by)
    • ARUK-UCL 6
    • BHF-UCL 13
    • ParkinsonsUK-UCL 4
    • SynGO-UCL 3
    • CAFA 1
    • CGD 1
    • EcoCyc 3
    • EcoliWiki 6
    • GeneDB 4
    • PomBase 5
    • RGD 9
    • SynGO 82
    • UniProt 146
    • WB 2

Annotation error reports and annotation review

  • Please remember to keep checking the reports generated by the pipeline and address any errors
  • Also check annotation review tickets assigned to you/your group in go-annotation repo on github
  • Questions about either - please bring to the meeting

GO-CAM and Noctua

Other Projects

Attendees

  • On call: David, Dmitry, Dustin, Giulia, Harold, Kimberly, Leonore, Li, Mahima, Pascale, Patrick, Raymond, Rob, Seth, Stan, Suzi, Val
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