Annotation Conf. Call 2022-11-22: Difference between revisions
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*[https://github.com/geneontology/go-annotation/issues/4261 Histone modifications] | *[https://github.com/geneontology/go-annotation/issues/4261 Histone modifications] | ||
*[https://docs.google.com/spreadsheets/d/1E-iKsWfinL_KP5cTXdwayIKPZ6RfJKl5KfvOkf9EoHk Extrinsic component of membrane] | *[https://docs.google.com/spreadsheets/d/1E-iKsWfinL_KP5cTXdwayIKPZ6RfJKl5KfvOkf9EoHk Extrinsic component of membrane] | ||
**Contributor (Assigned by) | **Contributor (Assigned by) | ||
*** ARUK-UCL 6 | *** ARUK-UCL 6 |
Revision as of 12:13, 22 November 2022
Agenda and Minutes
Meetings and Announcements
Noctua
- Next regularly scheduled Noctua outage:
- Thursday, December 1st and December 15th
- Outage tasks
Spring GOC Meeting Plans
- Survey - please reply
- Padua, Italy - late April, before the ISB meeting
- Another Italy option - the two days after the ISB (this was not on the original survey, but is now also an option) - email Pascale if you have strong feelings one way or the other wrt before/after the ISB meeting
- Baltimore, MD - late May/early June (two options)
- Padua, Italy - late April, before the ISB meeting
GO Release Pipeline
- November release out on November 3rd
- Encourage people to check #release-pipeline channel on Slack for up-to-date info
- If your group changes any practice that would alter significantly the number of annotations, please let Pascale know
- Next release in Dec should have IBAs from new PANTHER 17.0. Breakdown of changes by GAF file: https://docs.google.com/spreadsheets/d/1ShFwfNGk67v9XKj9COVPdHGaUfqIICtMi7wY-wkFcfY/edit#gid=1051461976
- Drop of 7.91% (-316642 IBAs) compared to previous IBA release 2022-09-26. A significant portion of this drop (2.95 of the 7.91%) is due to a code change that removes redundant IBAs, meaning generic term annotations were dropped when a more specific term annotation exists.
AmiGO
Ontology
Annotation
Annotation Reviews
- Histone modifications
- Extrinsic component of membrane
- Contributor (Assigned by)
- ARUK-UCL 6
- BHF-UCL 13
- ParkinsonsUK-UCL 4
- SynGO-UCL 3
- CAFA 1
- CGD 1
- EcoCyc 3
- EcoliWiki 6
- GeneDB 4
- PomBase 5
- RGD 9
- SynGO 82
- UniProt 146
- WB 2
- Contributor (Assigned by)
Annotation error reports and annotation review
- Please remember to keep checking the reports generated by the pipeline and address any errors
- Also check annotation review tickets assigned to you/your group in go-annotation repo on github
- Questions about either - please bring to the meeting
GO-CAM and Noctua
Other Projects
Attendees
- On call: David, Dmitry, Dustin, Giulia, Harold, Kimberly, Leonore, Li, Mahima, Pascale, Patrick, Raymond, Rob, Seth, Stan, Suzi, Val