Annotation Conf. Call 2022-11-22

Agenda and Minutes

Meetings and Announcements

Noctua

• Next regularly scheduled Noctua outage:
  • Thursday, December 1st and December 15th
  • Outage tasks

Spring GOC Meeting Plans

• Survey - please reply
  • Padua, Italy - late April, before the ISB meeting
    • Another Italy option - the two days after the ISB (this was not on the original survey, but is now also an option) - email Pascale if you have strong feelings one way or the other wrt before/after the ISB meeting
  • Baltimore, MD - late May/early June (two options)

GO Release Pipeline

• November release out on November 3rd
  • Encourage people to check #release-pipeline channel on Slack for up-to-date info
• If your group changes any practice that would alter significantly the number of annotations, please let Pascale know
• Next release in Dec should have IBAs from new PANTHER 17.0. Breakdown of changes by GAF file: https://docs.google.com/spreadsheets/d/1ShFwfNGk67v9XKj9COVPdHGaUfqIICtMi7wY-wkFcfY/edit#gid=1051461976
  • Drop of 7.91% (-316642 IBAs) compared to previous IBA release 2022-09-26. A significant portion of this drop (2.95 of the 7.91%) is due to a code change that removes redundant IBAs, meaning generic term annotations were dropped when a more specific term annotation exists.

Annotation

Annotation Reviews

• Histone modifications
• Extrinsic component of membrane

Contributor (Assigned by)

• ARUK-UCL 6
• BHF-UCL 13
• ParkinsonsUK-UCL 4
• SynGO-UCL 3
• CAFA 1
• CGD 1
• EcoCyc 3
• EcoliWiki 6
• GeneDB 4
• PomBase 5
• RGD 9
• SynGO 82
• UniProt 146
• WB 2

Annotation error reports and annotation review

• Please remember to keep checking the reports generated by the pipeline and address any errors
• Also check annotation review tickets assigned to you/your group in go-annotation repo on github
• Questions about either - please bring to the meeting

Attendees

• On call: