Annotation Conf. Call 2022-11-22

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Revision as of 12:01, 22 November 2022 by Vanaukenk (talk | contribs) (→‎Attendees)
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Agenda and Minutes

Meetings and Announcements

Noctua

  • Next regularly scheduled Noctua outage:

Spring GOC Meeting Plans

  • Survey - please reply
    • Padua, Italy - late April, before the ISB meeting
      • Another Italy option - the two days after the ISB (this was not on the original survey, but is now also an option) - email Pascale if you have strong feelings one way or the other wrt before/after the ISB meeting
    • Baltimore, MD - late May/early June (two options)

GO Release Pipeline

  • November release out on November 3rd
    • Encourage people to check #release-pipeline channel on Slack for up-to-date info
  • If your group changes any practice that would alter significantly the number of annotations, please let Pascale know
  • Next release in Dec should have IBAs from new PANTHER 17.0. Breakdown of changes by GAF file: https://docs.google.com/spreadsheets/d/1ShFwfNGk67v9XKj9COVPdHGaUfqIICtMi7wY-wkFcfY/edit#gid=1051461976
    • Drop of 7.91% (-316642 IBAs) compared to previous IBA release 2022-09-26. A significant portion of this drop (2.95 of the 7.91%) is due to a code change that removes redundant IBAs, meaning generic term annotations were dropped when a more specific term annotation exists.

AmiGO

Ontology

Annotation

Annotation Reviews

Contributor (Assigned by)

  • ARUK-UCL 6
  • BHF-UCL 13
  • ParkinsonsUK-UCL 4
  • SynGO-UCL 3
  • CAFA 1
  • CGD 1
  • EcoCyc 3
  • EcoliWiki 6
  • GeneDB 4
  • PomBase 5
  • RGD 9
  • SynGO 82
  • UniProt 146
  • WB 2

Annotation error reports and annotation review

  • Please remember to keep checking the reports generated by the pipeline and address any errors
  • Also check annotation review tickets assigned to you/your group in go-annotation repo on github
  • Questions about either - please bring to the meeting

GO-CAM and Noctua

Other Projects

Attendees

  • On call: David, Dmitry, Dustin, Harold, Kimberly, Leonore, Li, Mahima, Pascale, Patrick, Seth, Stan, Val