Annotation Conf. Call 2022-11-29
Agenda and Minutes
Meetings and Announcements
Noctua
- Next regularly scheduled Noctua outage:
- Thursday, December 1st and December 15th
- Outage tasks
2022 - 2023 Annotation Calls
- Last call: Tuesday, December 6th, 2022
- No calls: December 13th and 20th
- Tentative: no GO calls first week of January
- Tentative: first annotation call: January 10th
Spring GOC Meeting Plans
- Padua, Italy - late April, the two days after the ISB (this was not on the original survey)
- Tentative plan: Thursday, Friday with group outing late Friday afternoon, and group dinner Friday night, Saturday AM
GO Release Pipeline
- December release to start later this week
Protein2GO
- Noctua imports for WB and SGD
- Issue of contributor assignment for ISS annotations has come up (deja vu?)
- Changes to original experimental annotation result in contributor also being assigned to the ISS annotation
- Is this the desired behavior? Do we need to make changes in Protein2GO behavior?
- Issue of contributor assignment for ISS annotations has come up (deja vu?)
AmiGO
Ontology
Term Merges and Obsoletions
- New proposed SOP for handling merges and obsoletions: No longer merge terms, only obsolete. When we used to merge, we'll now do obsolete + replaced by
- Noctua and P2GO automatically updates obsoleted terms that have a replaced_by; is this a problem for any group on the call?
- Note that QuickGO and AmiGO also repairs these annotations during the load process
- Streamline announcements for obsoleted terms having a replaced_by term: once per release (link to stats:
- For consistency with the OWL representation, and with other OBO ontologies, we would like to create obsolete terms for all alt_id entries. These would have a replaced_by link to the active term. After this, the ontology would contain no alt_id tags. (https://github.com/geneontology/go-ontology/issues/24467)
Upcoming Projects
Annotation
Annotation Reviews
Annotation error reports and annotation review
- Please remember to keep checking the reports generated by the pipeline and address any errors
- Also check annotation review tickets assigned to you/your group in go-annotation repo on github
- Questions about either - please bring to the meeting
GO-CAM and Noctua
Other Projects
Attendees
- On call: