Agenda

Apoptosis curation

If you have questions about any of the new terms, please post them on SourceForge.
Davids question about a paper (Pablo, Paola please add this example to the manual)
Karen- it will be useful to add some of the common apoptotic drug targets. Pablo will provide a link to a good review in the manual.
David- although we shouldn't be annotating to the top level terms, it is okay to annotate to the broad terms if that is the best you can do.
Li- differentiate between hormone induced apoptosis and extrinsic apoptotic signaling pathway in the absence of ligand
- Pablo will add his comments to the manual
Li- cell type specific apoptosis- should we create a new term or use col-16?
- paola- precompose a new term. if the cell type is not in the cell type ontology, then the ontology editors will work with cell type folks to add it.

Minutes are available on Google docs (link available from the GOC wiki- http://gocwiki.geneontology.org/index.php/2013_Cambridge_GOC_Meeting_Agenda).
AmiGO 2 (http://amigo2.berkeleybop.org/cgi-bin/amigo2/amigo) is ready for testing. Please report your bugs at: http://github.com/kltm/amigo/issues or send them to Seth/Chris
New website is being worked on (check the new logo). http://beta.geneontology.org
Galaxy environment has been set up (http://galaxy.berkeleybop.org/). It will be integrated with the new website.
Annotation extension column (propagating/inferring)
Misused terms (http://gocwiki.geneontology.org/index.php/Misused_terms - we will be going through them in future annotation calls)
discussion on read-out vs actual involvement in the process
Create Orcid account http://orcid.org/ (for Termgenie login) and send your username to Jane
Cell cycle changes