Annotation Conf. Call August 13, 2013

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Agenda

Consolidating Protein Binding annotations

Proposal: To consolidate all 'direct' interactions captured by other Interaction pipelines into the respective GAF files.

  • We will integrate 'Direct' interactions only
  • Of course all interaction databases capture the interacting protein name. We will capture that data in the With column
  • When possible, the interaction will be mapped to a granular term instead of retaining the annotation as protein binding (histone binding instead of protein binding). This process will need some work (evidence code, assigned_by etc).
  • Should we take results from small scale experiments only? What about HTP experiments?
  • Should we integrate only those interactions that have been reported by more than one paper or one method?

Col-16 curation

We have some documentation on the GOC website- http://www.geneontology.org/GO.annotation.extension.shtml Now that there are more groups annotating col-16, for consistency sake, we will go through specific examples at future annotation calls. We would like each group to send a paper out ahead of time so we can go through the annotations as a group.

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