Annotation Conf. Call February 26, 2013: Difference between revisions

From GO Wiki
Jump to navigation Jump to search
No edit summary
No edit summary
 
(One intermediate revision by one other user not shown)
Line 1: Line 1:
[[Category:Annotation Working Group]]
* PAINT workshop update
* PAINT workshop update
* Upcoming GOC meeting in Cambridge, UK (please register)- http://gocwiki.geneontology.org/index.php/2013_Cambridge_GOC_Meeting_Agenda (not final)
* Upcoming GOC meeting in Cambridge, UK (please register)- http://gocwiki.geneontology.org/index.php/2013_Cambridge_GOC_Meeting_Agenda (not final)
Line 5: Line 6:
==Discussion==
==Discussion==
* How often is the PAINT directory (filtered) updated in SVN? Rama will check into this.
* How often is the PAINT directory (filtered) updated in SVN? Rama will check into this.
* what happens when a manual annotation is removed or changed? How do you follow up? DO you recurate?
* Petra- DictyBase moved to protein2GO completely and are able to submit a new GAF file after the move.
* Petra- DictyBase moved to protein2GO completely and are able to submit a new GAF file after the move.
* Wormbase has completed a roundtrip for curating into protein2GO and integrating back in WB
* Wormbase has completed a roundtrip for curating into protein2GO and integrating back in WB

Latest revision as of 16:44, 9 April 2014

Discussion

  • How often is the PAINT directory (filtered) updated in SVN? Rama will check into this.
  • what happens when a manual annotation is removed or changed? How do you follow up? DO you recurate?
  • Petra- DictyBase moved to protein2GO completely and are able to submit a new GAF file after the move.
  • Wormbase has completed a roundtrip for curating into protein2GO and integrating back in WB
  • GOC website redesign is in the process
  • SGD is next in line to move to protein2GO
  • Auto-repair of annotations

GOMine

  • # of proteins retrieved (is it based on GAF or the total # of all genes)
  • protein coding, ncRNAs (query for these specific types for each taxa)