Annotation Conf. Call February 26, 2013: Difference between revisions
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[[Category:Annotation Working Group]] | |||
* PAINT workshop update | * PAINT workshop update | ||
* Upcoming GOC meeting in Cambridge, UK (please register)- http://gocwiki.geneontology.org/index.php/2013_Cambridge_GOC_Meeting_Agenda (not final) | * Upcoming GOC meeting in Cambridge, UK (please register)- http://gocwiki.geneontology.org/index.php/2013_Cambridge_GOC_Meeting_Agenda (not final) | ||
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==Discussion== | ==Discussion== | ||
* How often is the PAINT directory (filtered) updated in SVN? Rama will check into this. | * How often is the PAINT directory (filtered) updated in SVN? Rama will check into this. | ||
* what happens when a manual annotation is removed or changed? How do you follow up? DO you recurate? | |||
* Petra- DictyBase moved to protein2GO completely and are able to submit a new GAF file after the move. | * Petra- DictyBase moved to protein2GO completely and are able to submit a new GAF file after the move. | ||
* Wormbase has completed a roundtrip for curating into protein2GO and integrating back in WB | * Wormbase has completed a roundtrip for curating into protein2GO and integrating back in WB |
Latest revision as of 16:44, 9 April 2014
- PAINT workshop update
- Upcoming GOC meeting in Cambridge, UK (please register)- http://gocwiki.geneontology.org/index.php/2013_Cambridge_GOC_Meeting_Agenda (not final)
- GOMine tutorial
Discussion
- How often is the PAINT directory (filtered) updated in SVN? Rama will check into this.
- what happens when a manual annotation is removed or changed? How do you follow up? DO you recurate?
- Petra- DictyBase moved to protein2GO completely and are able to submit a new GAF file after the move.
- Wormbase has completed a roundtrip for curating into protein2GO and integrating back in WB
- GOC website redesign is in the process
- SGD is next in line to move to protein2GO
- Auto-repair of annotations
GOMine
- # of proteins retrieved (is it based on GAF or the total # of all genes)
- protein coding, ncRNAs (query for these specific types for each taxa)