Annotation Conf. Call February 26, 2013

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  • How often is the PAINT directory (filtered) updated in SVN? Rama will check into this.
  • what happens when a manual annotation is removed or changed? How do you follow up? DO you recurate?
  • Petra- DictyBase moved to protein2GO completely and are able to submit a new GAF file after the move.
  • Wormbase has completed a roundtrip for curating into protein2GO and integrating back in WB
  • GOC website redesign is in the process
  • SGD is next in line to move to protein2GO
  • Auto-repair of annotations


  • # of proteins retrieved (is it based on GAF or the total # of all genes)
  • protein coding, ncRNAs (query for these specific types for each taxa)