Annotation Conf. Call June 11, 2013: Difference between revisions

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m (Created page with "==Agenda== * Confusing terms ** protein dimerization, oligomerization etc. Process terms: GO:0006461 protein complex assembly GO:0035786 protein complex oligomerization GO:0051...")
 
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Process terms:
Process terms:
GO:0006461 protein complex assembly
GO:0006461 protein complex assembly
GO:0035786 protein complex oligomerization
GO:0035786 protein complex oligomerization
GO:0051259 protein oligomerization
GO:0051259 protein oligomerization
GO:0051260 protein homooligomerization
GO:0051260 protein homooligomerization
GO:0051291 protein heterooligomerization
GO:0051291 protein heterooligomerization
GO:0051262 protein tetramerization
GO:0051262 protein tetramerization
GO:0051289 protein homotetramerization
GO:0051289 protein homotetramerization
GO:0051290 protein heterotetramerization
GO:0051290 protein heterotetramerization
GO:0070206 protein trimerization
GO:0070206 protein trimerization
GO:0070207 protein homotrimerization
GO:0070207 protein homotrimerization
GO:0070208 protein heterotrimerization
GO:0070208 protein heterotrimerization
GO:0034214 protein hexamerization
GO:0034214 protein hexamerization
...and regulation terms
...and regulation terms


Function terms:
Function terms:
GO:0046983 protein dimerization activity
GO:0046983 protein dimerization activity
GO:0042803 protein homodimerization activity
GO:0042803 protein homodimerization activity
GO:0046982 protein heterodimerization activity
GO:0046982 protein heterodimerization activity




1. Should we represent these in the ontology?
1. Should we represent these in the ontology?
2. If so, we need guidelines for their use
2. If so, we need guidelines for their use


Revision as of 05:35, 10 June 2013

Agenda

  • Confusing terms
    • protein dimerization, oligomerization etc.

Process terms:

GO:0006461 protein complex assembly

GO:0035786 protein complex oligomerization

GO:0051259 protein oligomerization

GO:0051260 protein homooligomerization

GO:0051291 protein heterooligomerization

GO:0051262 protein tetramerization

GO:0051289 protein homotetramerization

GO:0051290 protein heterotetramerization

GO:0070206 protein trimerization

GO:0070207 protein homotrimerization

GO:0070208 protein heterotrimerization

GO:0034214 protein hexamerization

...and regulation terms

Function terms:

GO:0046983 protein dimerization activity

GO:0042803 protein homodimerization activity

GO:0046982 protein heterodimerization activity


1. Should we represent these in the ontology?

2. If so, we need guidelines for their use

Previous discussions are here: http://wiki.geneontology.org/index.php/Jamboree_18_July_2008-minutes and http://wiki.geneontology.org/index.php/2010_GO_camp_Annotation_of_complexes_issues

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