Annotation Extension: Difference between revisions
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==Purpose of annotation extensions== | ==Purpose of annotation extensions== | ||
'''Annotation Extensions''' allows GO terms in standard annotations to be further specified, using gene products, chemicals, cell types, anatomical structures. The ontology terms used to extend annotations are GO term or external ontologies. Annotation extensions allows to build a more complete model of biological systems. | '''Annotation Extensions''' allows GO terms in standard annotations to be further specified, using gene products, chemicals, cell types, anatomical structures. The ontology terms used to extend annotations are GO term or external ontologies. Annotation extensions allows to build a more complete model of biological systems. | ||
==Relations valid for annotation extensions== | |||
Relations used for GO annotation extensions are from the [https://oborel.github.io/ Relation Ontology ] | |||
* [[Annotation_Extension_Relation:has_input|has_input]] | |||
* [[Annotation_Extension_Relation:has_output|has_output]] | |||
==Other pages to review== | ==Other pages to review== |
Revision as of 09:44, 29 September 2021
Purpose of annotation extensions
Annotation Extensions allows GO terms in standard annotations to be further specified, using gene products, chemicals, cell types, anatomical structures. The ontology terms used to extend annotations are GO term or external ontologies. Annotation extensions allows to build a more complete model of biological systems.
Relations valid for annotation extensions
Relations used for GO annotation extensions are from the Relation Ontology
Other pages to review
- http://wiki.geneontology.org/index.php/Annotation_Extension (this page)
- http://wiki.geneontology.org/index.php/Annotation_Relations
- http://wiki.geneontology.org/index.php/Guidance_for_updating_deprecated_Annotation_Extension_Relations
- https://github.com/geneontology/annotation_extensions (NOTE that P2GO links to this doc - 2021-09-29 is this still the case??) archived
- Ruth's slides
- Spreadsheets 'P2GO - GP2Term relations' and 'P2GO - Extensions' https://docs.google.com/spreadsheets/d/1vkBVTyUg1tjipUtYGan5Ob0vE14H_j6O-PuTH9619eg/edit#gid=1318491961