Annotation Extension Relation:has indirect input: Difference between revisions
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'''USAGE OF THIS RELATION HAS BEEN DEPRECATED''' | |||
<pre style="color:#808080"> | |||
==Definition== | ==Definition== | ||
Identifies an entity indirectly affected (bound, transported, modified, consumed or destroyed) by the gene product's participation in | Identifies an entity indirectly affected (bound, transported, modified, consumed or destroyed) by the gene product's participation in a Molecular Function or Biological Process. | ||
==Comment== | |||
If the entity is directly bound/acted upon by the gene product that is the subject of the annotation, then the relation: has_direct_input should be alternatively considered. | |||
==Synonyms== | |||
has_indirect_target (EXACT) | |||
indirectly_localizes (NARROW) | |||
==Child terms== | ==Child terms== | ||
* None | * None | ||
==Scope of use== | |||
===Domain=== | |||
BFO:0000007 ! process (Biological Process or Molecular Function) | |||
===Range=== | |||
[[ENTITY_UNION:0000005]] ! chemical, gene product, or complex | |||
==Annotation Extension Usage Examples== | ==Annotation Extension Usage Examples== | ||
1. PMID:11278723 (Fig 3a) | 1. [http://www.ncbi.nlm.nih.gov/pubmed?term=11278723 PMID:11278723] (Fig 3a) | ||
Overexpression of JIK increases the phosphorylation of TRAF2 (Q12933). | Overexpression of JIK increases the phosphorylation of TRAF2 (Q12933). | ||
Line 17: | Line 44: | ||
col 5: GO:0006468 ! protein phosphorylation | col 5: GO:0006468 ! protein phosphorylation | ||
col 16: has_indirect_input(Q12933) | col 16: has_indirect_input(Q12933) | ||
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</pre> | |||
[[Category:Deprecated]] |
Latest revision as of 08:39, 27 September 2021
USAGE OF THIS RELATION HAS BEEN DEPRECATED
==Definition== Identifies an entity indirectly affected (bound, transported, modified, consumed or destroyed) by the gene product's participation in a Molecular Function or Biological Process. ==Comment== If the entity is directly bound/acted upon by the gene product that is the subject of the annotation, then the relation: has_direct_input should be alternatively considered. ==Synonyms== has_indirect_target (EXACT) indirectly_localizes (NARROW) ==Child terms== * None ==Scope of use== ===Domain=== BFO:0000007 ! process (Biological Process or Molecular Function) ===Range=== [[ENTITY_UNION:0000005]] ! chemical, gene product, or complex ==Annotation Extension Usage Examples== 1. [http://www.ncbi.nlm.nih.gov/pubmed?term=11278723 PMID:11278723] (Fig 3a) Overexpression of JIK increases the phosphorylation of TRAF2 (Q12933). JIK (Q9H2K8) should be annotated to; col 5: GO:0006468 ! protein phosphorylation col 16: has_indirect_input(Q12933) ----