Annotation Extension Relation:has indirect input: Difference between revisions

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'''USAGE OF THIS RELATION HAS BEEN DEPRECATED'''
<pre style="color:#808080">
==Definition==
==Definition==


Identifies an entity indirectly affected (bound, transported, modified, consumed or destroyed) by the gene product's participation in MF or BP.
Identifies an entity indirectly affected (bound, transported, modified, consumed or destroyed) by the gene product's participation in a Molecular Function or Biological Process.
 
==Comment==
 
If the entity is directly bound/acted upon by the gene product that is the subject of the annotation, then the relation: has_direct_input should be alternatively considered.
 
==Synonyms==
 
has_indirect_target (EXACT)
 
indirectly_localizes (NARROW)


==Child terms==
==Child terms==
Line 28: Line 45:
   col 16: has_indirect_input(Q12933)
   col 16: has_indirect_input(Q12933)


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Back to [http://wiki.geneontology.org/index.php/Annotation_usage_examples_for_each_annotation_extension_relation  Annotation usage examples for each annotation extension relation]
</pre>
 
[[Category:Deprecated]]
[[Category:relations]]
[[Category:annotation extension]]

Latest revision as of 08:39, 27 September 2021

USAGE OF THIS RELATION HAS BEEN DEPRECATED


 


==Definition==

Identifies an entity indirectly affected (bound, transported, modified, consumed or destroyed) by the gene product's participation in a Molecular Function or Biological Process.

==Comment==

If the entity is directly bound/acted upon by the gene product that is the subject of the annotation, then the relation: has_direct_input should be alternatively considered.

==Synonyms==

has_indirect_target (EXACT)

indirectly_localizes (NARROW)

==Child terms==

* None

==Scope of use==

===Domain===

BFO:0000007 ! process (Biological Process or Molecular Function) 

===Range===

[[ENTITY_UNION:0000005]] ! chemical, gene product, or complex

==Annotation Extension Usage Examples==


1. [http://www.ncbi.nlm.nih.gov/pubmed?term=11278723 PMID:11278723] (Fig 3a)
Overexpression of JIK increases the phosphorylation of TRAF2 (Q12933).

JIK (Q9H2K8) should be annotated to;

  col 5: GO:0006468 ! protein phosphorylation
  col 16: has_indirect_input(Q12933)

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