Annotation Extension Relation:has regulation target: Difference between revisions

From GO Wiki
Jump to navigation Jump to search
Line 8: Line 8:


==Annotation Extension Usage Examples==
==Annotation Extension Usage Examples==
'''Loss of transcription factor activity affects gene expression:'''
Statements from paper: 
''Indeed, LGG-1 was massively upregulated in atf-2(tm467) mutant embryos, as compared with the wild type (Fig. 6A). We observed a similar extent of BEC-1 upregulation in the atf-2-deficient background (data not shown).'' 
{| class="wikitable" border="1"
|-
! Gene Name (col 2)
! GO ID (col 5)
! Reference (col 6)
! Evidence (col 7)
! Annotation Extension (col 16)
|-
| WBGene00000220
|GO:0000122 <span style="color:green">negative regulation of transcription from RNA polymerase II promoter</span>
| PMID:21502138
| IMP
|
has_regulation_target(WB:WBGene00000247 <span style="color:green">bec-1</span>)|has_regulation_target(WB:WBGene00002980 <span style="color:green">lgg-1</span>
|}
Back to [http://wiki.geneontology.org/index.php/Annotation_Extension:_Capturing_participants Annotation Extension: Capturing participants]

Revision as of 16:05, 25 July 2012

Definition

Identifies a gene or gene product affected by a regulation BP (or regulator MF).

Child terms

  • None

Annotation Extension Usage Examples

Loss of transcription factor activity affects gene expression:

Statements from paper:

Indeed, LGG-1 was massively upregulated in atf-2(tm467) mutant embryos, as compared with the wild type (Fig. 6A). We observed a similar extent of BEC-1 upregulation in the atf-2-deficient background (data not shown).


Gene Name (col 2) GO ID (col 5) Reference (col 6) Evidence (col 7) Annotation Extension (col 16)
WBGene00000220 GO:0000122 negative regulation of transcription from RNA polymerase II promoter PMID:21502138 IMP

has_regulation_target(WB:WBGene00000247 bec-1)|has_regulation_target(WB:WBGene00002980 lgg-1

Back to Annotation Extension: Capturing participants

Retrieved from "https://wiki.geneontology.org/index.php?title=Annotation_Extension_Relation:has_regulation_target&oldid=41290"