Annotation Extension Relation:results in specification of: Difference between revisions
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==Annotation Extension Usage Examples== | ==Annotation Extension Usage Examples== | ||
== Using examples to demonstrate [[Folding_and_Unfolding]] using the relationship results_in_specification_of == | |||
'''Indicating the cell or cell type specified by the activity of a gene product''' | |||
Statement from paper: | |||
''However, the strong loss-of-function allele of eya-1, ok654 (Furuya et al., 2005), displayed M lineage phenotypes similar to ceh-34(RNAi-P): loss of M-derived CCs and variable loss of embryonic CCs (Table 1, Fig. 3A). Thus, both ceh-34 and eya-1 are required for specifying the embryonic and M-derived CCs.'' | |||
Note that in the above sentence, M refers to the M mesoblast and CCs refers to coelomocytes. | |||
{| class="wikitable" border="1" | |||
|- | |||
! Gene Name (col 2) | |||
! GO ID (col 5) | |||
! Reference (col 6) | |||
! Evidence (col 7) | |||
! With (col 8) | |||
! Annotation Extension (col 16) | |||
|- | |||
| Q94165 <span style="color:green">ceh-34</span> | |||
| GO:0007501 <span style="color:green">mesodermal cell fate specification</span> | |||
| PMID:19427847 | |||
| IMP | |||
| WB:WBRNAi00101780 | |||
| results_in_specification_of(WBbt:0005751 <span style="color:green">coelomocyte</span>) | |||
|- | |||
| O17670 <span style="color:green">eya-1</span> | |||
| GO:0007501 <span style="color:green">mesodermal cell fate specification</span> | |||
| PMID:19427847 | |||
| IMP | |||
| WB:WBVar00091938 | |||
| results_in_specification_of(WBbt:0005751 <span style="color:green">coelomocyte</span>) | |||
|- | |||
|} | |||
== Using examples to demonstrate [[Folding_and_Unfolding]] using the relationship results_in_specification_of == | |||
'''Indicating the cell or cell type specified by the activity of a gene product''' | |||
Statement from paper: | |||
''However, the strong loss-of-function allele of eya-1, ok654 (Furuya et al., 2005), displayed M lineage phenotypes similar to ceh-34(RNAi-P): loss of M-derived CCs and variable loss of embryonic CCs (Table 1, Fig. 3A). Thus, both ceh-34 and eya-1 are required for specifying the embryonic and M-derived CCs.'' | |||
{| class="wikitable" border="1" | {| class="wikitable" border="1" | ||
! Folded/unfolded | ! Folded/unfolded | ||
! | ! Gene Name (col 2) | ||
! GO ID (col 5) | |||
!GO ID ( | ! Reference (col 6) | ||
!Reference ( | ! Evidence (col 7) | ||
!Extension ( | ! With (col 8) | ||
!Parent terms | ! Annotation Extension (col 16) | ||
! Parent terms of new folded GO term | |||
|- | |- | ||
| Unfolded | | Unfolded | ||
| | | Q94165 <span style="color:green">ceh-34</span> | ||
| GO:0007501 <span style="color:green">mesodermal cell fate specification</span> | |||
| PMID:19427847 | |||
| IMP | |||
| WB:WBRNAi00101780 | |||
| results_in_specification_of(WBbt:0005751 <span style="color:green">coelomocyte</span>) | |||
| | | | ||
| | |- | ||
| | | Unfolded | ||
| | | O17670 <span style="color:green">eya-1</span> | ||
| GO:0007501 <span style="color:green">mesodermal cell fate specification</span> | |||
| PMID:19427847 | |||
| IMP | |||
| WB:WBVar00091938 | |||
| results_in_specification_of(WBbt:0005751 <span style="color:green">coelomocyte</span>) | |||
| | | | ||
|- | |- | ||
| Folded | | Folded | ||
| | | Q94165 <span style="color:green">ceh-34</span> | ||
| | | GO:0007501 <span style="color:green">mesodermal cell fate specification resulting in specification of coelomocyte</span> | ||
| | | PMID:19427847 | ||
| | | IMP | ||
| | | WB:WBRNAi00101780 | ||
| | | | ||
| is_a <span style="color:red">mesodermal cell fate specification</span> | |||
|- | |||
| Folded | |||
| O17670 <span style="color:green">eya-1</span> | |||
| GO:0007501 <span style="color:green">mesodermal cell fate specification resulting in specification of coelomocyte</span> | |||
| PMID:19427847 | |||
| IMP | |||
| WB:WBVar00091938 | |||
| | |||
| is_a <span style="color:red">mesodermal cell fate specification</span> | |||
|- | |- | ||
|} | |} | ||
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'''OWL class expression:''' | '''OWL class expression:''' | ||
---- | ---- | ||
'''OWL class expression:''' GO:0007501 <span style="color:red">mesodermal cell fate specification</span> results_in_specification_of SOME WBbt:0005751 <span style="color:red">coelomocyte</span> | |||
---- | ---- |
Revision as of 10:45, 6 March 2015
Back to Annotation usage examples for each annotation extension relation
Definition
The relationship linking a cell and its participation in a Molecular Function or Biological Process that results in the fate of the cell being specified. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment.
Comment
Synonyms
Child terms
- None
Scope of use
Domain
BFO:0000007 ! process (Biological Process or Molecular Function)
Range
CL:0000000 ! cell
Annotation Extension Usage Examples
Indicating the cell or cell type specified by the activity of a gene product
Statement from paper:
However, the strong loss-of-function allele of eya-1, ok654 (Furuya et al., 2005), displayed M lineage phenotypes similar to ceh-34(RNAi-P): loss of M-derived CCs and variable loss of embryonic CCs (Table 1, Fig. 3A). Thus, both ceh-34 and eya-1 are required for specifying the embryonic and M-derived CCs.
Note that in the above sentence, M refers to the M mesoblast and CCs refers to coelomocytes.
Gene Name (col 2) | GO ID (col 5) | Reference (col 6) | Evidence (col 7) | With (col 8) | Annotation Extension (col 16) |
---|---|---|---|---|---|
Q94165 ceh-34 | GO:0007501 mesodermal cell fate specification | PMID:19427847 | IMP | WB:WBRNAi00101780 | results_in_specification_of(WBbt:0005751 coelomocyte) |
O17670 eya-1 | GO:0007501 mesodermal cell fate specification | PMID:19427847 | IMP | WB:WBVar00091938 | results_in_specification_of(WBbt:0005751 coelomocyte) |
Using examples to demonstrate Folding_and_Unfolding using the relationship results_in_specification_of
Indicating the cell or cell type specified by the activity of a gene product
Statement from paper:
However, the strong loss-of-function allele of eya-1, ok654 (Furuya et al., 2005), displayed M lineage phenotypes similar to ceh-34(RNAi-P): loss of M-derived CCs and variable loss of embryonic CCs (Table 1, Fig. 3A). Thus, both ceh-34 and eya-1 are required for specifying the embryonic and M-derived CCs.
Folded/unfolded | Gene Name (col 2) | GO ID (col 5) | Reference (col 6) | Evidence (col 7) | With (col 8) | Annotation Extension (col 16) | Parent terms of new folded GO term |
---|---|---|---|---|---|---|---|
Unfolded | Q94165 ceh-34 | GO:0007501 mesodermal cell fate specification | PMID:19427847 | IMP | WB:WBRNAi00101780 | results_in_specification_of(WBbt:0005751 coelomocyte) | |
Unfolded | O17670 eya-1 | GO:0007501 mesodermal cell fate specification | PMID:19427847 | IMP | WB:WBVar00091938 | results_in_specification_of(WBbt:0005751 coelomocyte) | |
Folded | Q94165 ceh-34 | GO:0007501 mesodermal cell fate specification resulting in specification of coelomocyte | PMID:19427847 | IMP | WB:WBRNAi00101780 | is_a mesodermal cell fate specification | |
Folded | O17670 eya-1 | GO:0007501 mesodermal cell fate specification resulting in specification of coelomocyte | PMID:19427847 | IMP | WB:WBVar00091938 | is_a mesodermal cell fate specification |
OWL class expression:
OWL class expression: GO:0007501 mesodermal cell fate specification results_in_specification_of SOME WBbt:0005751 coelomocyte
Back to Annotation usage examples for each annotation extension relation