Annotation Quality Control: Difference between revisions

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== Annotation Rules ==
#REDIRECT [[Annotation#Annotation_quality_control]]
[https://github.com/geneontology/go-site/tree/master/metadata/rules GO Rules]


==[[Annotation Review Request]] ==
Annotation quality control checks ensure that GO annotations are of high quality. The annotation validation process includes both format checks on the raw data and tests of the quality of the data within the file.


==[[GO Central (GOC) QC Procedure]]==
GO Central rules are documented here:
https://github.com/geneontology/go-site/blob/master/metadata/rules/README.md


[[Category: Annotation]] [[Category:Working Groups]]
===GO rules===
* (Documentation in progress): https://github.com/geneontology/go-site/tree/master/metadata/rules
* The QC checks consist of either "filters" or "reports". Filters exclude annotations from the files that the GO consortium generates; reports allow the annotations to be exported, but contributing groups get notified to correct annotations.
 
* '''GO rules reports'''
** Snapshot (the report groups should monitor daily or weekly): http://snapshot.geneontology.org/reports/gorule-report.html
** Latest Official Monthly Release (the errors present in our most up to date release): http://current.geneontology.org/reports/gorule-report.html
 
===[[Annotation Review Request]]===
How the GOC uses GitHub to request review of annotations
 
=== [[Proposal for Author Feedback for annotations]] ===
* To be implemented
 
=[[QC procedures from contributing groups]]=
 
 
== Review Status ==
 
Last reviewed: 2019-04-11
 
 
[[Category: Annotation]] [[Category:Quality_Control]]

Latest revision as of 02:05, 20 April 2022

Annotation quality control checks ensure that GO annotations are of high quality. The annotation validation process includes both format checks on the raw data and tests of the quality of the data within the file.

GO Central (GOC) QC Procedure

GO Central rules are documented here: https://github.com/geneontology/go-site/blob/master/metadata/rules/README.md

GO rules

  • (Documentation in progress): https://github.com/geneontology/go-site/tree/master/metadata/rules
  • The QC checks consist of either "filters" or "reports". Filters exclude annotations from the files that the GO consortium generates; reports allow the annotations to be exported, but contributing groups get notified to correct annotations.

Annotation Review Request

How the GOC uses GitHub to request review of annotations

Proposal for Author Feedback for annotations

  • To be implemented

QC procedures from contributing groups

Review Status

Last reviewed: 2019-04-11